FC926019

Overview
NameFC926019
Unique NameFC926019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1468 contig Ccv1_Contig1468:1..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926019 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.739e-42
Identity = 101/184 (54.89%), Postives = 124/184 (67.39%), Query Frame = 2
Query:   95 SVVPARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFV 589
            S++   +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT          P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFV
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFV 190          
BLAST of FC926019 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.287e-33
Identity = 84/194 (43.30%), Postives = 118/194 (60.82%), Query Frame = 2
Query:   47 STKMAASLPTQSMLGSSVVPARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKN------EQQKDQSTQP------PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFV 589
            S+   A++P  S  G S +    T    + ++       LP  ++RN   +VR M ++      +QQK Q T        P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T          P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+V
Sbjct:    3 SSTCYATIPAMSCRGQSTI----TRFGPNNLFLGKQSYELP-LMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYV 191          
BLAST of FC926019 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.605e-30
Identity = 78/179 (43.58%), Postives = 99/179 (55.31%), Query Frame = 2
Query:   56 MAASLPTQSMLGSSVVPARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFV 589
            MA  +   S  G++VVP       +S    F + + LP       +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA TE +
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEII 164          
BLAST of FC926019 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.293e-29
Identity = 70/150 (46.67%), Postives = 89/150 (59.33%), Query Frame = 2
Query:  146 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFV 589
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA TE +
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEII 159          
BLAST of FC926019 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 68/123 (55.28%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  242 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFV 589
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T          PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFI 223          
BLAST of FC926019 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.696e-13
Identity = 59/155 (38.06%), Postives = 72/155 (46.45%), Query Frame = 2
Query:  149 SSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPR--------ISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTE 583
            +S+   P  L R  +    C      + + ST PP  P          +   ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T          P F       K D  G  T DAE+ NGRFAM+G  A+ V E
Sbjct:   16 ASINVRPAPLLRTAAPKRVCKHIVRAENNPSTPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYE 164          
The following BLAST results are available for this feature:
BLAST of FC926019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.739e-4254.89Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL3.287e-3343.30Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU2.605e-3043.58Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.293e-2946.67Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU2.438e-2855.28High molecular mass early light-inducible protein ... [more]
CBR_DUNBA1.696e-1338.06Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YP04FM1 TF Citrus clementina cDNA clone KN0AAP11YP04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926019 ID=FC926019; Name=FC926019; organism=Citrus clementina; type=EST; length=591bp
TTAACCTAATAACTCCCAGTTGCTAAATTATTCCTCCGTTGCATAATCCA
CAAAAATGGCTGCTTCACTCCCCACTCAATCTATGCTTGGAAGCTCTGTC
GTCCCAGCTCGTGTTACCGGCATCAGGAAATCTGGGGTGTACCAATTTTC
CTCTGTTAAGTACTTACCTGGTACTCTGCAGAGAAATGTTAGCTTATCAG
TGCGCTGCATGGCTAAGAATGAGCAGCAGAAGGATCAATCAACTCAGCCA
CCAAAGCTACCGCGTATAAGCACGAAGTTCTCTGACGTGTTTGCGTTCAG
CGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCG
TGGCTGCATTGGCGGTGGAGCTATCCAAGGGTCAGGATGTGTTTGCCCAG
TTATCAGACGGTGGAGTTGCCTGGTTCTTGGGGACCAGTGTTCTGCTTTC
GGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAAT
CGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGAGGTTCGCT
ATGATGGGTCTTGTTGCTTTGGCTGTCACTGAGTTTGTTAA
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