FC926020

Overview
NameFC926020
Unique NameFC926020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15339 contig Ccv1_Contig15339:219..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC926020 vs. ExPASy Swiss-Prot
Match: Y4213_ARATH (UPF0480 protein At4g32130 OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.083e-38
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 2 
Query:   41 KASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEPLTEEQYYEIREPFSHNVSCEKPNG 346
            K SN+KV+LNGG+HVTFLRPDGYF+F  + AGTHLIEV A+GYFFSPVRVDVSARH GKVQA LTETRR L ELVLEPL  EQYYE+REPFS     + P G
Sbjct:   53 KFSNIKVILNGGQHVTFLRPDGYFTFHKVPAGTHLIEVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKSPMG 154
The following BLAST results are available for this feature:
BLAST of FC926020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4213_ARATH7.083e-3874.51UPF0480 protein At4g32130 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YP05FM1 TF Citrus clementina cDNA clone KN0AAP11YP05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926020 ID=FC926020; Name=FC926020; organism=Citrus clementina; type=EST; length=375bp
TCCCGGTATGAGTTTGAAAGCATTTGGCTCTCCTGGAGGAAAAGCATCGA
ATGTGAAAGTTGTACTCAATGGTGGCGAACATGTGACATTTCTGAGGCCC
GATGGATATTTTTCATTCCAGAACATGTCCGCCGGGACTCATTTAATTGA
AGTGGCTGCAATTGGTTATTTCTTTTCTCCCGTCCGGGTTGATGTTAGTG
CCAGACACCCAGGCAAGGTTCAGGCAGCATTGACGGAAACCAGGAGGGGT
CTGAATGAATTGGTTTTAGAGCCATTGACAGAGGAGCAATATTACGAGAT
TAGAGAACCTTTTTCCCATAATGTCTCTTGTGAAAAGCCCAATGGGTCCC
ATGATGGGATTTATGCTAGTGGTTG
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