FC926324

Overview
NameFC926324
Unique NameFC926324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRXS9_ARATH (Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana GN=GRXS9 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.676e-39
Identity = 72/98 (73.47%), Postives = 91/98 (92.86%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPYQ 490
            MDKV R++SEKGVVIFSKSSCC+ YAV +LFQ+LGVHP V+EID+DPE +E+EKALMR+GC+ PVPA+F+ G+L+GSTNEVMSLHLSG+L+PL+KP+Q
Sbjct:    1 MDKVVRMSSEKGVVIFSKSSCCMSYAVQVLFQDLGVHPTVHEIDKDPECREIEKALMRLGCSTPVPAIFVGGKLIGSTNEVMSLHLSGSLVPLVKPFQ 98          
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRS11_ARATH (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana GN=GRXS11 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.505e-37
Identity = 71/97 (73.20%), Postives = 89/97 (91.75%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPY 487
            MDKV R++SEKGVVIF+KSSCCL YAV +LFQ+LGV+P ++EID+DPE +E+EKALMR+GC+ PVPAVFI G+LVGSTNEVMS+HLS +L+PL+KPY
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGCSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLVKPY 97          
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRC14_ARATH (Glutaredoxin-C14 OS=Arabidopsis thaliana GN=GRXC14 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.581e-37
Identity = 71/100 (71.00%), Postives = 89/100 (89.00%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPYQPF 496
            MDKV R++SEKGVVIF+KSSCCLCYAV ILF++L V P ++EID DP+ +E+EKAL+R+GC   VPAVF+SG+LVGSTN+VMSLHLSG+L+PL+KPYQ F
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALVRLGCANAVPAVFVSGKLVGSTNDVMSLHLSGSLVPLIKPYQSF 100          
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRC13_ARATH (Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.581e-37
Identity = 70/98 (71.43%), Postives = 88/98 (89.80%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPYQ 490
            MDKV R++SEKGVVIF+KSSCCLCYAV ILF++L V P ++EID DP+ +E+EKAL+R+GC+  VPAVF+ G+LVGSTNEVMSLHLSG+L+PL+KPYQ
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALLRLGCSTAVPAVFVGGKLVGSTNEVMSLHLSGSLVPLIKPYQ 98          
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.472e-29
Identity = 64/96 (66.67%), Postives = 80/96 (83.33%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMR-MGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 481
            MD+V RLA+++ VVIFS SSCC+C+ V  LF ELGV+P V E+D+DP GKEMEKAL R +G +  VPAVFI G+LVGST++VMSLHLSGNL+PLL+
Sbjct:    1 MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLR 96          
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMR-MGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 481
            MD+V +LASE+ VVIF+ SSCC+C+ V  LF +LGV+ +V+E+DQDP GKEME+AL++ +G   PVP VFI G+LVG TN++MSLHL G LIP+LK
Sbjct:    1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLK 96          
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 481
            M+K+ ++ SEK +VIFSK+SCC+ + +  LF +LGV+P +YE+D+   GKE+E+AL ++GC+  VP VFI GQLVG  N+VMSLHL+ +LIP+LK
Sbjct:    1 MEKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLK 95          
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 52/95 (54.74%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 481
            MDK+ ++ SEK VVIFSK+SCC+ + +  LF + GV+P +YE+D+   GKE+E+AL ++GC+  VP VFI GQLVG  N+VMSLHL+ +L+P+LK
Sbjct:    1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLK 95          
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 51/95 (53.68%), Postives = 73/95 (76.84%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLK 481
            MD +T++  E+ VVI+SKSSCC+ + +  L  + G +P VYE+D+   G+E+E+AL+R+GC+  VP VFI G+LVG  NEVMSLHL+G+LIP+LK
Sbjct:    1 MDMITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLK 95          
BLAST of FC926324 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25
Identity = 52/97 (53.61%), Postives = 74/97 (76.29%), Query Frame = 2
Query:  197 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSTNEVMSLHLSGNLIPLLKPY 487
            M+K+ ++ SEK VVIFS +SCC+ + +  LF +LGV+P +YE+D+   GKE+E AL ++GC+  VP VFI GQLVG  N+VMSLHL+ +LIP+LK +
Sbjct:    1 MEKIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRF 97          
The following BLAST results are available for this feature:
BLAST of FC926324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
GRXS9_ARATH2.676e-3973.47Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana ... [more]
GRS11_ARATH2.505e-3773.20Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana... [more]
GRC14_ARATH5.581e-3771.00Glutaredoxin-C14 OS=Arabidopsis thaliana GN=GRXC14... [more]
GRC13_ARATH5.581e-3771.43Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13... [more]
GRXC1_ORYSJ1.472e-2966.67Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRC14_ORYSJ3.626e-2861.46Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRXS7_ARATH7.560e-2654.74Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRXS4_ARATH7.560e-2654.74Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXS2_ARATH1.290e-2553.68Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana ... [more]
GRXS8_ARATH1.684e-2553.61Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YL21FM1 TF Citrus clementina cDNA clone KN0AAP5YL21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926324 ID=FC926324; Name=FC926324; organism=Citrus clementina; type=EST; length=727bp
TCCTTTTCTCCCCTTCTCACTTTTCCTTCTCTCAAATCCTTCCTCACCAT
CACCACCCCGAATTCAACTAGAGTTCGGTTTGATGGTATATAGGTTTTAA
GTGAACTCTACGTAACCCGAGGACTTCTCTGTGTTTAACATTTCCCGTCC
CGTGATACTTCAATCTTTAAGTAAGGGAGAAGCCACTCTTATCGTCATGG
ACAAGGTGACAAGGTTGGCCTCAGAGAAAGGAGTAGTAATATTCAGCAAG
AGCTCGTGTTGCCTCTGCTATGCAGTCAACATTCTATTTCAGGAACTTGG
TGTCCACCCTATGGTTTATGAGATTGACCAAGATCCTGAAGGCAAGGAAA
TGGAGAAAGCTCTGATGAGGATGGGTTGTAACGCGCCCGTTCCAGCAGTG
TTCATTTCTGGACAGCTTGTGGGATCCACCAATGAAGTCATGTCTCTCCA
TCTAAGTGGCAATCTGATTCCGCTGCTGAAGCCTTACCAGCCTTTCTCTT
AATCTAAACTACTCTGAATGTCACAATCTCATTGGCGAATAAATTCGGCA
CCAATTAGTAGTTGTAGTGTGCTCAGTGATGTGTAGCAGTCTATATAGCT
GGTTGTGTTTCGAGTACTTCATAGCTTTGAATTAGCTATAACATGTGTTT
GTAATGTGCTTCCTTTTATTAATGAAAGTAGCTTTATATACTTTTAATTA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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