FC926427

Overview
NameFC926427
Unique NameFC926427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11133 contig Ccv1_Contig11133:710..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STIP_SOYBN (Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.030e-48
Identity = 92/111 (82.88%), Postives = 102/111 (91.89%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHRNPRHVEK 531
            GNAAYKKK+FE AI HYS ALELDD DISYLTNRAAVYLEMGK+E+CIKDC+KAVERG+ELRSD+KMIARALTRKGTAL KMAKCSKD+EPAIE FQ ALTE+RNP  ++K
Sbjct:  249 GNAAYKKKDFETAIGHYSKALELDDEDISYLTNRAAVYLEMGKFEDCIKDCEKAVERGKELRSDYKMIARALTRKGTALAKMAKCSKDFEPAIEIFQKALTENRNPDTLKK 359          
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STIP1_MOUSE (Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHRNPRHVEK 531
            GN AYKKK+F+KA++HY  A ELD  +++Y+TN+AAV+ E G Y +C + C+KA+E GRE R D++ IA+A  R G +  K  K    Y+ AI  +  +L EHR P  ++K
Sbjct:  232 GNDAYKKKDFDKALKHYDRAKELDPTNMTYITNQAAVHFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK----YKDAIHFYNKSLAEHRTPDVLKK 338          
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STIP1_HUMAN (Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHRNPRHVEK 531
            GN AYKKK+F+ A++HY  A ELD  +++Y+TN+AAVY E G Y +C + C+KA+E GRE R D++ IA+A  R G +  K  K    Y+ AI  +  +L EHR P  ++K
Sbjct:  232 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK----YKDAIHFYNKSLAEHRTPDVLKK 338          
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STIP1_RAT (Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.192e-22
Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHRNPRHVEK 531
            GN AYKKK+F+KA++HY  A ELD  +++Y+TN+AAV+ E G Y +C + C+KA+E GRE R D++ IA+A  R G +  K     + Y+ AI  +  +L EHR P  ++K
Sbjct:  232 GNDAYKKKDFDKALKHYDKAKELDPTNMTYITNQAAVHFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK----EERYKDAIHFYNKSLAEHRTPDVLKK 338          
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STIP1_MACFA (Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.087e-22
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHRNPRHVEK 531
            GN AYKKK+F+ A++HY  A ELD  +++Y+TN+AAVY E G Y +C + C+KA++ GRE R D++ IA+A  R G +  K  K    Y+ AI  +  +L EHR P  ++K
Sbjct:  232 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIDVGRENREDYRQIAKAYARIGNSYFKEEK----YKDAIHFYNKSLAEHRTPDVLKK 338          
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STIP1_BOVIN (Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.087e-22
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHRNPRHVEK 531
            GN AYKKK+F+ A++HY  A +LD  +++Y+TN+AAVY E G Y +C + C+KA+E GRE R D++ IA+A  R G +  K  K    Y+ AI  +  +L EHR P  ++K
Sbjct:  232 GNEAYKKKDFDTALKHYDKAKDLDPTNMTYITNQAAVYFEKGDYGQCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK----YKDAIHFYNKSLAEHRTPDVLKK 338          
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STIP1_CRIGR (Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.073e-21
Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHRNPRHVEK 531
            GN AYKKK+F+ A++HY  A ELD  +++Y+TN+AAV+ E G Y +C + C+KA+E GRE R D++ IA+A  R G +  K     + Y+ AI  +  +L EHR P  ++K
Sbjct:  232 GNEAYKKKDFDMALKHYDRAKELDPTNMTYITNQAAVHFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK----EERYKDAIHFYNKSLAEHRTPDVLKK 338          
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STI1_SCHPO (Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe GN=sti1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHRNP 516
            GN  YKK+ F  AIE Y  A +   +DI+YL N AA Y E  + ++CIK C+ A+E+GRELR+DFK+IA+AL R GT   K      D   AI+ +Q +LTEHR P
Sbjct:  272 GNENYKKRNFPVAIEQYKKAWDTY-KDITYLNNLAAAYFEADQLDDCIKTCEDAIEQGRELRADFKLIAKALGRLGTTYQKRG----DLVKAIDYYQRSLTEHRTP 372          
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STI1_YEAST (Heat shock protein STI1 OS=Saccharomyces cerevisiae GN=STI1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHR 510
            GN  YK ++F++AIEHY+ A EL  +DI+YL NRAA   E G+YE  I   + AVE+GRE+R+D+K+I+++  R G A  K+     D +  IE +Q +LTEHR
Sbjct:  269 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG----DLKKTIEYYQKSLTEHR 367          
BLAST of FC926427 vs. ExPASy Swiss-Prot
Match: STIP1_DICDI (Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.023e-16
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  199 GNAAYKKKEFEKAIEHYSSALELDDRDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYEPAIETFQNALTEHRN 513
            GN AY KKEFE+AI HY  A+ELD  DI  + N+AAV +E  K +E I+ C KA+E+ +E+R+D+++ ++  TR G   +K        + A + + +A+ E +N
Sbjct:  251 GNKAYAKKEFEQAIVHYDKAVELDSSDILAMNNKAAVLIEQQKLDEAIETCKKALEKAQEIRADYRVKSKVYTRLGNIYLK----KNQLDDAYKAYSSAVLEDKN 351          
The following BLAST results are available for this feature:
BLAST of FC926427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
STIP_SOYBN5.030e-4882.88Heat shock protein STI OS=Glycine max GN=STI PE=2 ... [more]
STIP1_MOUSE3.630e-2245.95Stress-induced-phosphoprotein 1 OS=Mus musculus GN... [more]
STIP1_HUMAN3.630e-2245.95Stress-induced-phosphoprotein 1 OS=Homo sapiens GN... [more]
STIP1_RAT6.192e-2245.05Stress-induced-phosphoprotein 1 OS=Rattus norvegic... [more]
STIP1_MACFA8.087e-2245.05Stress-induced-phosphoprotein 1 OS=Macaca fascicul... [more]
STIP1_BOVIN8.087e-2245.05Stress-induced-phosphoprotein 1 OS=Bos taurus GN=S... [more]
STIP1_CRIGR3.073e-2144.14Stress-induced-phosphoprotein 1 OS=Cricetulus gris... [more]
STI1_SCHPO2.602e-2049.06Heat shock protein sti1 homolog OS=Schizosaccharom... [more]
STI1_YEAST3.757e-1947.12Heat shock protein STI1 OS=Saccharomyces cerevisia... [more]
STIP1_DICDI1.023e-1640.00Protein STIP1 homolog OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YO08FM1 TF Citrus clementina cDNA clone KN0AAP5YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926427 ID=FC926427; Name=FC926427; organism=Citrus clementina; type=EST; length=538bp
TTATATGTGATCTTTTAGGGGCCCACTGGTGGTGATGACGTGGAATTGCA
GGACGAATATGCCCCATAAGGACCGGAGACGTCTAATGAGGAGACGAGGA
AGCCGGAGTCTGAGCCCGAGCCTGAGCCCATGGAGCTAACGGAGGAGGAG
AAGGAAGCTACGGAAAGAAAAGAAAAGGCATTAAAGGAGAAAGAGGCGGG
AAACGCTGCTTATAAGAAGAAGGAATTTGAGAAAGCAATTGAACATTACT
CCAGTGCACTGGAGCTCGATGATAGGGATATTTCTTACCTGACTAATCGT
GCGGCGGTTTATCTCGAAATGGGCAAGTATGAGGAATGCATCAAGGATTG
TGACAAGGCTGTCGAAAGGGGAAGAGAGCTTAGATCTGACTTTAAGATGA
TAGCAAGAGCTTTAACTAGGAAGGGAACTGCTCTGGTGAAAATGGCAAAA
TGTTCAAAGGACTATGAACCTGCTATTGAGACTTTCCAGAATGCTCTAAC
TGAGCATCGCAATCCCAGACACGTTGAAAAAACTTAAT
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