FC926742

Overview
NameFC926742
Unique NameFC926742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.536e-49
Identity = 92/111 (82.88%), Postives = 96/111 (86.49%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            IVK+FDD TRE+P GHCLVAGIKK P KVI KDSAKKTAK SRVKAFVKLV+YQHLMPTRYTLDVDLK  V  D LQSKDKK+ A KETKK LEERFKT KNRWFFTKLRF
Sbjct:   25 IVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 36.5798 bits (83), Expect = 1.536e-49
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            MV FLKPNK VILL GRYAG+
Sbjct:    1 MVKFLKPNKAVILLQGRYAGK 21
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.066e-47
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            I+KSFDD  R+RP GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+LQSKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct:   25 IIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 33.4982 bits (75), Expect = 1.066e-47
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            MV FLK NK VILL GRYAG+
Sbjct:    1 MVKFLKQNKAVILLQGRYAGK 21
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 4.351e-46
Identity = 85/111 (76.58%), Postives = 94/111 (84.68%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            I+KSFDD T +R  GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+L+SKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct:   25 IIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 33.4982 bits (75), Expect = 4.351e-46
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            MV FLK NK VILL GRYAG+
Sbjct:    1 MVKFLKQNKAVILLQGRYAGK 21
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 9.423e-43
Identity = 81/111 (72.97%), Postives = 93/111 (83.78%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            IVKSFDD T E+  GHCLVAG+KK P KVI KDSAKKTAK SRVK F K+++YQH+MPTRYTLD+DLK VV+AD++ SKDKK+ A KE K + EERFKT KNRWFFTKLRF
Sbjct:   25 IVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 28.8758 bits (63), Expect = 9.423e-43
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            MV  +KP K VILL GRY G+
Sbjct:    1 MVKCMKPGKAVILLQGRYTGK 21
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.148e-40
Identity = 79/115 (68.70%), Postives = 91/115 (79.13%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL----KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            IV++FD+ TR+RP GHCLVAGI + P KVI KDSAKK  K SRVKAF+KLV+Y H+MPTRYTLD DL    K VV AD LQ++DKK+ A + TK RL ERFKT KNRWFFTKLRF
Sbjct:   25 IVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138

HSP 2 Score: 34.2686 bits (77), Expect = 4.148e-40
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            M  FLKPNK VILL G+YAGR
Sbjct:    1 MEKFLKPNKAVILLQGKYAGR 21
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.707e-32
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            IV++FDD T  RP GH LV G++K P KV  + S KK AK S +K F+K V+Y HLMPTRYTLDVD K  V A++ ++  KK+ A KE KK LEE+FKT KNRWFFTKLRF
Sbjct:   25 IVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFK-GVAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134

HSP 2 Score: 28.1054 bits (61), Expect = 7.707e-32
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            MV FLK  K V++L GR+AG+
Sbjct:    1 MVKFLKSGKVVVVLSGRFAGK 21
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 5.030e-27
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++KAFVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 29.6462 bits (65), Expect = 5.030e-27
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            M  F+KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 5.030e-27
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++KAFVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 29.6462 bits (65), Expect = 5.030e-27
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            M  F+KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.110e-26
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            IVK+ DD T +RP  H LV+GI + P KV      KK AK S++KAFVK+ +Y HLMPTRY++D+ L K +V  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 29.6462 bits (65), Expect = 1.110e-26
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            M  F+KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of FC926742 vs. ExPASy Swiss-Prot
Match: RL27_RAT (60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.881e-26
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:  134 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 466
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.8758 bits (63), Expect = 1.881e-26
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   72 MVTFLKPNKTVILL*GRYAGR 134
            M  F+KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21
The following BLAST results are available for this feature:
BLAST of FC926742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA1.536e-4982.8860S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH1.066e-4778.3860S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH4.351e-4676.5860S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL271_ARATH9.423e-4372.9760S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU4.148e-4068.7060S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST7.707e-3260.3660S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27_HIPCM5.030e-2752.6860S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_DANRE5.030e-2752.6860S ribosomal protein L27 OS=Danio rerio GN=rpl27 ... [more]
RL27_ICTPU1.110e-2650.8960S ribosomal protein L27 OS=Ictalurus punctatus G... [more]
RL27_RAT1.881e-2651.7960S ribosomal protein L27 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP7YF10FM1 TF Citrus clementina cDNA clone KN0AAP7YF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926742 ID=FC926742; Name=FC926742; organism=Citrus clementina; type=EST; length=663bp
TGTTGCCAGCCTCTGCACAAACACACAAAAACCCAGAGAGAGTCGCGGGC
GCGCGAGGAGTGAGAGTTGAAATGGTGACGTTTCTGAAACCAAATAAGAC
CGTGATCCTTCTTTAGGGCCGTTACGCCGGCCGATTGTGAAGTCGTTCGA
CGACAGGACCCGCGAGAGGCCGAACGGGCACTGTCTGGTAGCGGGGATAA
AGAAGTAACCGGGCAAAGTGATCCACAAGGACTCGGCGAAGAAGACAGCG
AAGTAGTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAGCTACCAGCACCT
GATGCCCACGCGCTACACTCTCGACGTCGATTTGAAGGTAGTCGTGACGG
CTGATTCCCTCCAGAGCAAGGACAAGAAGATGATAGCTTGCAAGGAGACC
AAGAAACGCCTCGAGGAGAGGTTTAAGACTAGCAAGAATCGTTGGTTCTT
TACTAAGCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTTGTC
GTTTTGTTTTGTTTTGTGTTATTGAAAACGCTTTAGTTGTTAAAGTGCGA
ATTTTGAGATTTATGTAGTGTTTTGTGAACTTATTTTTTTTCTGGATCTG
GTACTATTTTTATATGAAAAAAAAAAATCACGCTGCCGACAAAAAAAAAA
AAAAAAAAAAAAA
back to top