FC927032

Overview
NameFC927032
Unique NameFC927032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 1.619e-94
Identity = 162/180 (90.00%), Postives = 172/180 (95.56%), Query Frame = 1
Query:    1 APVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            APVAGYHWFDGDGMIHGLRIKDGKATYVSRFV TSRLKQEE+FG +KFMKIGDLKGLFGLLMVN+ MLR KLKVLD+SYG GT NTALVYHHGKLLALSEADKPYA+KV EDGDLQTLGM+DYDKRL HSFTAHPKVDP+TGEMF+FGYAHTPPYITYRVISKDG+MHDPVPITISDPI+
Sbjct:   91 APVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKIGDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFSFGYAHTPPYITYRVISKDGYMHDPVPITISDPIM 270          
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.160e-92
Identity = 157/180 (87.22%), Postives = 172/180 (95.56%), Query Frame = 1
Query:    1 APVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            +PVAGYHWFDGDGMIHGLRIKDGKA+YVSRFV+TSR KQEE+F G+KFMKIGDLKGLFGLLMVNMQMLRAKLK+LDVSYG+GTANTALVYHH KLLALSE DKPYA+KV EDGDLQTLGM+DYDKRL H+FTAHPKVDP+TGEMFTFGY+HT PY+TYRVISKDGFM DPVPITISDP++
Sbjct:   89 SPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLLMVNMQMLRAKLKILDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHTAPYVTYRVISKDGFMQDPVPITISDPVM 268          
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 1.675e-91
Identity = 156/178 (87.64%), Postives = 168/178 (94.38%), Query Frame = 1
Query:    7 VAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            VAGYHWFDGDGMIHG+RIKDGKATYVSR+V+TSRLKQEEFFG AKFMKIGDLKG FGLLMVN+Q LR KLK+LD +YGNGTANTALVYHHGKLLAL EADKPY +KVLEDGDLQTLG+IDYDKRL HSFTAHPKVDP TGEMFTFGY+HTPPY+TYRVISKDG MHDPVPITIS+PI+
Sbjct:   91 VAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPIM 268          
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 8.604e-88
Identity = 150/179 (83.80%), Postives = 163/179 (91.06%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            PVAGYHWFDGDGMIHG+RIKDGKATY SR+V+TSRLKQEE+F G KFMKIGDLKG FGL MV MQ+LRAKLKV+DVSYG GT NTAL+YHHGKLLALSEADKPY VKVLEDGDLQTLG++DYDKRL HSFTAHPKVDP+T EMFTFGYAHTPPY+TYRVISKDG M DPVPITI   ++
Sbjct:   94 PVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLFMVQMQLLRAKLKVIDVSYGVGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLSHSFTAHPKVDPFTDEMFTFGYAHTPPYVTYRVISKDGVMRDPVPITIPASVM 272          
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.293e-37
Identity = 83/182 (45.60%), Postives = 111/182 (60.99%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKA-TYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            PVAG+H FDGDGM+H LRI++G A +Y  RF  T+RL+QE   G   F K IG+L G  G+  + +   RA   ++D S G G AN  LVY +G+LLA+SE D PY V+V +DGDL+T+G  D+D +L  +  AHPK+DP TGE+    Y     PY+ Y     DG   D V I +  P +
Sbjct:  164 PVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTM 345          
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 76/181 (41.99%), Postives = 111/181 (61.33%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            PV G+H+FDGDGM+H ++ + G A+Y  RF +T+R  QE   G   F K IG+L G  G+  + +   RA   ++D ++G G AN  LVY +G+LLA+SE D PY V++  +GDL+T+G  D+D +L+ +  AHPKVDP +GE+F   Y   + PY+ Y   S DG     V I +  P +
Sbjct:  164 PVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSYDVVSKPYLKYFRFSPDGTKSPDVEIQLDQPTM 344          
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35
Identity = 76/181 (41.99%), Postives = 107/181 (59.12%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            PV+G+H FDGDGM+H ++I +G A+Y  RF  T RL QE+  G   F K IG+L G  G+  + +   R    +L+   G G AN  LVY H +LLA+SE D PY V+V ++GDL+T+G  D+D +L  +  AHPK+DP T E+F   Y     PY+ Y   S +G     V I ++ P +
Sbjct:  154 PVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFALSYDVVKKPYLKYFKFSPEGEKSPDVEIPLASPTM 334          
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.220e-33
Identity = 76/181 (41.99%), Postives = 105/181 (58.01%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            PV+G+H FDGDGM+H +R  +G  +Y  RF  T+RL QE   G   F K IG+L G  G+  + +   R    ++D + G G AN  LVY +G LLA+SE D PY VKV + GDL+T G  D+D +L+ +  AHPK+DP T E+F   Y   + PY+ Y   + DG     V I +  P +
Sbjct:  224 PVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPKIDPETRELFALSYDVVSKPYLKYFRFTSDGEKSPDVEIPLDQPTM 404          
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.220e-33
Identity = 73/181 (40.33%), Postives = 107/181 (59.12%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            PVAG+H+FDGDGM+H ++  +G A+Y  RF  T RL QE+  G   F K IG+L G  G+  + +   R+  +++D S+G G AN  LVY +  LLA+SE D PY V++  +GDL T+G  D++ +L  +  AHPK+DP  G++    Y     PY+ Y   S DG     V I + +P +
Sbjct:  183 PVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNGQLNSTMIAHPKLDPVNGDLHALSYDVVQKPYLKYFRFSADGVKSPDVEIPLKEPTM 363          
BLAST of FC927032 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.349e-32
Identity = 73/181 (40.33%), Postives = 105/181 (58.01%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPIL 540
            P AG+H FDGDGM+H ++I +G A+Y  RF +T RL QE+  G   F K IG+L G  G+  + +   R    +++   G G AN  LVY + +LLA+SE D PY +K+ + GDLQT+G  D+D +L+ +  AHPK+DP T E+    Y     PY+ Y   S DG     + I +  P +
Sbjct:  147 PTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLKSAMIAHPKLDPVTKELHALSYDVVKKPYLKYFRFSPDGVKSPELEIPLETPTM 327          
The following BLAST results are available for this feature:
BLAST of FC927032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD1_PHAVU1.619e-9490.00Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PEA1.160e-9287.22Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH1.675e-9187.64Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA8.604e-8883.80Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
NCED1_MAIZE5.293e-3745.609-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED3_ARATH1.540e-3641.999-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED5_ARATH8.451e-3541.99Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED9_ARATH1.220e-3341.999-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED1_PHAVU1.220e-3340.339-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED2_ARATH1.349e-3240.339-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF06FM1 TF Citrus clementina cDNA clone KN0AAP10YF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927032 ID=FC927032; Name=FC927032; organism=Citrus clementina; type=EST; length=540bp
GCCCCTGTGGCCGGATACCACTGGTTTGATGGAGATGGCATGATTCATGG
TCTGCGCATCAAAGACGGAAAGGCTACATATGTCTCCCGTTTTGTGAGGA
CTTCACGTCTTAAACAGGAAGAATTTTTTGGAGGTGCTAAATTTATGAAG
ATTGGAGACCTTAAGGGGCTATTTGGATTACTCATGGTTAACATGCAAAT
GCTTAGAGCAAAGTTGAAAGTACTGGATGTTTCATATGGAAATGGGACAG
CTAATACAGCTCTTGTATATCACCATGGGAAACTTCTAGCACTCTCAGAG
GCGGACAAACCATATGCCGTCAAAGTTCTGGAAGATGGAGATCTGCAAAC
ACTTGGTATGATTGACTATGACAAGAGATTACAACATTCCTTTACTGCCC
ATCCAAAGGTTGATCCATACACTGGCGAGATGTTTACCTTTGGCTATGCA
CACACACCACCATATATCACATACAGAGTTATTTCAAAGGATGGTTTCAT
GCATGATCCTGTACCAATAACCATATCAGACCCCATCTTG
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