FC927177
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: PUS3_MOUSE (tRNA pseudouridine synthase 3 OS=Mus musculus GN=Pus3 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27 Identity = 78/208 (37.50%), Postives = 107/208 (51.44%), Query Frame = 2 Query: 98 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 ++Q+E L NRVKELE + +L K + N +S + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTR LV ++ S+Y RCGRTDKGVS+ GQVI++ LRS T+ S ++ E + EI Y +LNRVLP DIRV+ W+P FSAR Sbjct: 7 RNQIEKLLNRVKELEQEVERLKKKKE----------------------QANNIKDSSIRENSLGSGKAKRAFDFSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR-LVESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSAR 188
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: PUS3_BOVIN (tRNA pseudouridine synthase 3 OS=Bos taurus GN=PUS3 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27 Identity = 65/131 (49.62%), Postives = 91/131 (69.47%), Query Frame = 2 Query: 326 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 H +R+VALK+ Y G + GFAS N T+E ++F+AL KTR LV +++ S+Y RCGRTDKGVS+ GQVI++ LRS+I K ++ + ++ V + + EI Y +LNRVLP DIRV+ W+P T FSAR Sbjct: 60 HGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR-LVENRQTSNYHRCGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVND--VATEIRYTHILNRVLPPDIRVLAWAPVETSFSAR 187
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: PUS3_HUMAN (tRNA pseudouridine synthase 3 OS=Homo sapiens GN=PUS3 PE=1 SV=3) HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25 Identity = 70/206 (33.98%), Postives = 109/206 (52.91%), Query Frame = 2 Query: 98 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 ++Q E L RV+ELE + +L + E+ ++K + + + + ++ + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTR LV ++ S+Y RCGRTDKGVS+ GQVI++ LRS ++ + +EI Y +LNRVLP DIR++ W+P FSAR Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNKEDSNIRENSAGAGKTKRA-----------------FDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR-LVESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSAR 187
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: TG124_CAEEL (Probable tRNA pseudouridine synthase tag-124 OS=Caenorhabditis elegans GN=tag-124 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16 Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 2 Query: 326 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED------EIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 H +R +A++ Y G G + + TVE+ I +AL KT L + D + +SRCGRTDKGVS+ Q A+ +RS + ++ QE Q D E+ YV++LN VLPK IRV W+P F+AR Sbjct: 27 HPRRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHL-IEDWTKCDFSRCGRTDKGVSAFKQTAAMVVRSLCP--GDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVLPKTIRVFAWAPVAQTFNAR 159
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: PUS3_YEAST (tRNA pseudouridine synthase 3 OS=Saccharomyces cerevisiae GN=PUS3 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13 Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 2 Query: 326 HFKRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED--EIDYVRVLNRVLPKDIRVMG-WSPAPTDFSAR 715 H R++AL+ Y G + G A P TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN+ + Q + D EI YV VLN++LP DIR+ P +F AR Sbjct: 89 HNTRFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSNLT----------DEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDAR 214
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: YL85_SCHPO (Putative tRNA pseudouridine synthase C25B8.05 OS=Schizosaccharomyces pombe GN=SPAC25B8.05 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13 Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 2 Query: 80 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 EL LQ +L N KE+E N + +K L +IE + H E LV ++ ++ T+ +VA K Y G + G A + PTVE ++F+AL + L + D +SRCGRTDKGVS++GQVI++ +R + + I Y VLNR+LP DIR+ G++ P F AR Sbjct: 20 ELDGKLQKNTNSLPN--KEIEGKNEVIKNKNKLDNGNEIEPQ-HLSQE----LVLQHALQDASSLPKLKPVRPFQLEKTV------FVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHL-ITDPSSCSFSRCGRTDKGVSAMGQVISLNVRHSERR-------------------PIIYCDVLNRLLPADIRITGYAFPPEGFDAR 200
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: TRUA_METST (tRNA pseudouridine synthase A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=truA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11 Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 2 Query: 335 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 R VALK+ Y G F+G+ N TVE E+ + ++T + + D +HYS GRTDKGV S G VI+ I DE ++ LN +LP DI+++G + P F R Sbjct: 2 RRVALKIAYIGSNFHGYQRQPNYR-TVEGELLRVFKETNI-IEDTWTAHYSVAGRTDKGVHSTGNVISF------------------------ITDEDIHINQLNGLLPDDIKIIGEARVPYGFKVR 102 The following BLAST results are available for this feature:
BLAST of FC927177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC927177 ID=FC927177; Name=FC927177; organism=Citrus clementina; type=EST; length=720bpback to top |