FC927177

Overview
NameFC927177
Unique NameFC927177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: PUS3_MOUSE (tRNA pseudouridine synthase 3 OS=Mus musculus GN=Pus3 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 78/208 (37.50%), Postives = 107/208 (51.44%), Query Frame = 2
Query:   98 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715
            ++Q+E L NRVKELE +  +L  K                        + N   +S                  + H +R+VALK+ Y G  + GFAS  N   T+E ++F+AL KTR LV  ++ S+Y RCGRTDKGVS+ GQVI++ LRS      T+  S    ++ E   +  EI Y  +LNRVLP DIRV+ W+P    FSAR
Sbjct:    7 RNQIEKLLNRVKELEQEVERLKKKKE----------------------QANNIKDSSIRENSLGSGKAKRAFDFSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR-LVESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSAR 188          
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: PUS3_BOVIN (tRNA pseudouridine synthase 3 OS=Bos taurus GN=PUS3 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27
Identity = 65/131 (49.62%), Postives = 91/131 (69.47%), Query Frame = 2
Query:  326 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715
            H +R+VALK+ Y G  + GFAS  N   T+E ++F+AL KTR LV +++ S+Y RCGRTDKGVS+ GQVI++ LRS+I K  ++ + ++   V +  +  EI Y  +LNRVLP DIRV+ W+P  T FSAR
Sbjct:   60 HGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR-LVENRQTSNYHRCGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVND--VATEIRYTHILNRVLPPDIRVLAWAPVETSFSAR 187          
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: PUS3_HUMAN (tRNA pseudouridine synthase 3 OS=Homo sapiens GN=PUS3 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.645e-25
Identity = 70/206 (33.98%), Postives = 109/206 (52.91%), Query Frame = 2
Query:   98 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715
            ++Q E L  RV+ELE +  +L       + E+ ++K    + + +    + ++                     + H +R+VAL++ Y G  + GFAS  N   T+E ++F+AL KTR LV  ++ S+Y RCGRTDKGVS+ GQVI++ LRS       ++       +     +EI Y  +LNRVLP DIR++ W+P    FSAR
Sbjct:    8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNKEDSNIRENSAGAGKTKRA-----------------FDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR-LVESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSAR 187          
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: TG124_CAEEL (Probable tRNA pseudouridine synthase tag-124 OS=Caenorhabditis elegans GN=tag-124 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  326 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED------EIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715
            H +R +A++  Y G    G     + + TVE+ I +AL KT L + D  +  +SRCGRTDKGVS+  Q  A+ +RS       +     ++ QE Q  D      E+ YV++LN VLPK IRV  W+P    F+AR
Sbjct:   27 HPRRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHL-IEDWTKCDFSRCGRTDKGVSAFKQTAAMVVRSLCP--GDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVLPKTIRVFAWAPVAQTFNAR 159          
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: PUS3_YEAST (tRNA pseudouridine synthase 3 OS=Saccharomyces cerevisiae GN=PUS3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  326 HFKRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED--EIDYVRVLNRVLPKDIRVMG-WSPAPTDFSAR 715
            H  R++AL+  Y G  + G A      P  TVE  I +A+ K +L+ +   + + +SRCGRTDKGVS++ QVI++ +RSN+           +  Q +   D  EI YV VLN++LP DIR+       P +F AR
Sbjct:   89 HNTRFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSNLT----------DEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDAR 214          
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: YL85_SCHPO (Putative tRNA pseudouridine synthase C25B8.05 OS=Schizosaccharomyces pombe GN=SPAC25B8.05 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 2
Query:   80 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715
            EL   LQ    +L N  KE+E  N  + +K  L    +IE + H   E    LV ++   ++                T+      +VA K  Y G  + G A   +    PTVE ++F+AL +  L + D     +SRCGRTDKGVS++GQVI++ +R + +                     I Y  VLNR+LP DIR+ G++  P  F AR
Sbjct:   20 ELDGKLQKNTNSLPN--KEIEGKNEVIKNKNKLDNGNEIEPQ-HLSQE----LVLQHALQDASSLPKLKPVRPFQLEKTV------FVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHL-ITDPSSCSFSRCGRTDKGVSAMGQVISLNVRHSERR-------------------PIIYCDVLNRLLPADIRITGYAFPPEGFDAR 200          
BLAST of FC927177 vs. ExPASy Swiss-Prot
Match: TRUA_METST (tRNA pseudouridine synthase A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=truA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 2
Query:  335 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715
            R VALK+ Y G  F+G+    N   TVE E+ +  ++T + + D   +HYS  GRTDKGV S G VI+                         I DE  ++  LN +LP DI+++G +  P  F  R
Sbjct:    2 RRVALKIAYIGSNFHGYQRQPNYR-TVEGELLRVFKETNI-IEDTWTAHYSVAGRTDKGVHSTGNVISF------------------------ITDEDIHINQLNGLLPDDIKIIGEARVPYGFKVR 102          
The following BLAST results are available for this feature:
BLAST of FC927177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PUS3_MOUSE5.113e-2737.50tRNA pseudouridine synthase 3 OS=Mus musculus GN=P... [more]
PUS3_BOVIN6.677e-2749.62tRNA pseudouridine synthase 3 OS=Bos taurus GN=PUS... [more]
PUS3_HUMAN1.645e-2533.98tRNA pseudouridine synthase 3 OS=Homo sapiens GN=P... [more]
TG124_CAEEL3.109e-1638.24Probable tRNA pseudouridine synthase tag-124 OS=Ca... [more]
PUS3_YEAST1.106e-1337.50tRNA pseudouridine synthase 3 OS=Saccharomyces cer... [more]
YL85_SCHPO1.886e-1331.31Putative tRNA pseudouridine synthase C25B8.05 OS=S... [more]
TRUA_METST6.708e-1133.86tRNA pseudouridine synthase A OS=Methanosphaera st... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YH17FM1 TF Citrus clementina cDNA clone KN0AAP10YH17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927177 ID=FC927177; Name=FC927177; organism=Citrus clementina; type=EST; length=720bp
CTCTTCTTCTGGTTCTGGGTGTGCGGCACTAGCACAGCAAGTACAGTTCA
AGCAATCGAACATGTCCGAAGCCAAACAAGAACTCATCTCCAGCTTGCAG
TCGCAATTAGAGGCTCTTCAAAACAGAGTTAAGGAATTAGAGGCTGATAA
TGCAAAGCTATTGTCAAAACTCTCTCTCTGTCGCTGTGAAAAGATAGAGG
ATAAGGTTCATGATGGTGTTGAAGATGGCACGACTTTGGTTGAGGAAAAT
AGGAAGACGGAAAGTGGAGGTTGTAAGACTGGGAAAAAGAAAGTAAAGGA
GAAAATGTCAGGAACTCTAAATCATCATTTCAAGAGATATGTTGCTCTAA
AAGTCATGTATTTTGGTCAGAGGTTTTACGGTTTTGCTTCGGATGGGAAT
ATGGAACCAACTGTGGAGTCTGAAATTTTCAAAGCTCTTGAGAAGACAAG
ACTTTTAGTTGCTGACAAGAAGGAATCACATTACTCGAGATGTGGCAGAA
CAGATAAGGGGGTTTCCTCTGTTGGGCAAGTAATTGCTATATATTTACGG
TCAAACATCAAGGAATGTAATACAAACAACGCAAGTATGGGTGAAACTGT
TCAAGAAGAACAAATAGAAGATGAAATTGATTATGTGAGAGTACTGAATC
GAGTCCTCCCAAAAGATATTCGAGTTATGGGGTGGTCTCCTGCTCCAACT
GATTTCAGTGCAAGGCTATG
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