FC927178

Overview
NameFC927178
Unique NameFC927178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SEC23_USTMA (Protein transport protein SEC23 OS=Ustilago maydis GN=SEC23 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.552e-53
Identity = 96/194 (49.48%), Postives = 130/194 (67.01%), Query Frame = 1
Query:  148 DPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT-CTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKE 726
            D E  DGVR++WNVWP +K+EA++ V+P++A  +P++   D+P + Y P+ CK  C A LN + ++D   K+WICPFC  RN FPPHY  IS TNLP EL P+YTT+EYTL    Q P          P+F++V+DTCM +++L   R  L  ++ LLP NA+VGL+T+GT A VHELG+    K YVFRG KE
Sbjct:    5 DVEDRDGVRLSWNVWPSSKIEATRTVVPISALYTPLKEREDLPPVLYEPVTCKPPCRAVLNPYCQIDVRGKLWICPFCLSRNAFPPHYKDISSTNLPAELLPKYTTIEYTLSRPAQIP----------PIFLYVVDTCMDDDDLKALREALVVSLSLLPPNALVGLITYGTMAQVHELGYDACPKSYVFRGTKE 188          
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SC23A_XENTR (Protein transport protein Sec23A OS=Xenopus tropicalis GN=sec23a PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.400e-51
Identity = 90/195 (46.15%), Postives = 132/195 (67.69%), Query Frame = 1
Query:  154 EGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCK--TCTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEIS 732
            E  DGVR +WNVWP +++EA++ V+P+AA ++P++  PD+P + Y P+ C   TC A LN   +VD+ AK+W C FCYQRN FPP YA ISE N P EL PQ++++EY +             P++  +F++V+DTCM +E+L   +  ++ ++ LLP  A+VGL+TFG   HVHELG   +SK YVFRGNK+++
Sbjct:   12 EDRDGVRFSWNVWPSSRLEATRMVVPVAALLTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISEMNQPAELLPQFSSIEYVVQRG----------PQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVHVHELGCEGISKSYVFRGNKDLT 196          
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SEC23_NEOFI (Protein transport protein sec23 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sec23 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.321e-51
Identity = 96/195 (49.23%), Postives = 131/195 (67.18%), Query Frame = 1
Query:  145 TDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT-CTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKE 726
            +D E  DG+R++WN +P T++EAS+ V+P+AA  +P++  PD P L Y P+ CK  C A LN +A VD  A+IWICPFC  RN  PPHY  I+E  +P EL+PQ TT+EY L         P P P   P+FV+V+DTC  E+ L   +  L  ++ LLP NA+VGL+T+GT A VHELG+++ +K YVFRG+KE
Sbjct:   11 SDVEDRDGIRLSWNTFPSTRMEASRLVVPIAAVYTPLKEKPDSPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITENAIPPELHPQSTTIEYQLAR-------PAPAP---PIFVYVVDTCQEEDSLKALKDTLILSLSLLPPNALVGLITYGTMAQVHELGYTECAKSYVFRGSKE 195          
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SEC23_ASPFU (Protein transport protein sec23 OS=Aspergillus fumigatus GN=sec23 PE=3 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.321e-51
Identity = 96/195 (49.23%), Postives = 131/195 (67.18%), Query Frame = 1
Query:  145 TDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT-CTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKE 726
            +D E  DG+R++WN +P T++EAS+ V+P+AA  +P++  PD P L Y P+ CK  C A LN +A VD  A+IWICPFC  RN  PPHY  I+E  +P EL+PQ TT+EY L         P P P   P+FV+V+DTC  E+ L   +  L  ++ LLP NA+VGL+T+GT A VHELG+++ +K YVFRG+KE
Sbjct:   11 SDVEDRDGIRLSWNTFPSTRMEASRLVVPIAAVYTPLKEKPDSPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITENAIPPELHPQSTTIEYQLAR-------PAPAP---PIFVYVVDTCQEEDSLKALKDTLILSLSLLPPNALVGLITYGTMAQVHELGYTECAKSYVFRGSKE 195          
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SEC23_COCIM (Protein transport protein SEC23 OS=Coccidioides immitis GN=SEC23 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.949e-51
Identity = 94/192 (48.96%), Postives = 129/192 (67.19%), Query Frame = 1
Query:  154 EGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT-CTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKE 726
            E  DG+R++WN +P T++EAS+ V+P+ A  +P++  PD P L Y P+ CK  C A LN +A VD  A+IWICPFC QRN  PPHY  I+E  +P EL+PQ TT+EY L         P P P   P+F+FV+DTC  E+ L   +  L  ++ LLP NA+VGL+TFGT A VHELG+++ +K YVF+G+K+
Sbjct:   14 EDRDGIRLSWNTFPSTRMEASRLVVPIGAIYTPLKERPDAPLLQYEPVTCKQPCRAVLNPYANVDIRARIWICPFCLQRNPLPPHYKDITENTIPPELHPQSTTIEYQLA-------RPAPAP---PIFLFVVDTCQEEDGLKAVKDSLVMSLSLLPPNALVGLITFGTMAQVHELGYTECAKSYVFKGSKD 195          
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SEC23_ASPCL (Protein transport protein sec23 OS=Aspergillus clavatus GN=sec23 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.022e-50
Identity = 95/195 (48.72%), Postives = 131/195 (67.18%), Query Frame = 1
Query:  145 TDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT-CTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKE 726
            +D E  DG+R++WN +P T++EAS+ V+P+AA  +P++  P+ P L Y P+ CK  C A LN +A VD  A+IWICPFC  RN  PPHY  I+E  +P EL+PQ TT+EY L         P P P   P+FV+V+DTC  E+ L   +  L  ++ LLP NA+VGL+TFGT A VHELG+++ +K YVFRG+K+
Sbjct:   11 SDVEERDGIRLSWNTFPSTRMEASRLVVPIAAVYTPLKEKPESPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITENAIPPELHPQSTTIEYQLAR-------PAPAP---PIFVYVVDTCQEEDSLKALKDTLILSLSLLPPNALVGLITFGTMAQVHELGYTECAKSYVFRGSKD 195          
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SC231_SCHPO (Protein transport protein sec23-1 OS=Schizosaccharomyces pombe GN=sec231 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.641e-50
Identity = 92/189 (48.68%), Postives = 125/189 (66.14%), Query Frame = 1
Query:  163 DGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT-CTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKE 726
            DGVR TWNV+P T++E+S+ ++P+A+   P+   PD+P + Y P+ CK  C A LN +  +D  AK WICPFC QRN  PP Y  IS T+LP EL P+Y+T+EYTLP            P+L+PVF+FV+D C  EE L   +  L  ++ LLP   +VGLVTFGT   V+ELG+++ SK YVFRG+K+
Sbjct:   10 DGVRFTWNVFPSTRIESSRTIVPIASIYKPLNERPDLPPVLYEPVTCKAPCKAVLNPYCHIDTRAKFWICPFCLQRNMLPPQYKDISNTSLPIELLPEYSTIEYTLPR----------PPQLTPVFLFVVDVCQDEENLQALKDSLIISLSLLPPECLVGLVTFGTMVDVYELGYTECSKSYVFRGSKD 188          
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SEC23_EMENI (Protein transport protein sec23 OS=Emericella nidulans GN=sec23 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.504e-50
Identity = 93/195 (47.69%), Postives = 130/195 (66.67%), Query Frame = 1
Query:  145 TDPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCKT-CTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKE 726
            +D E  DG+R++WN +P +++EAS+ V+P+ A  +P++  PD P L Y P+ CK  C A LN +A VD  A+IWICPFC  RN  PPHY  I+E+ +P EL+P  TT+EY L         P P P   P+FVFV+DTC  ++ L   +  L  ++ LLP NA+VGL+TFGT A VHELG+++ +K YVFRG+K+
Sbjct:   11 SDVEDRDGIRLSWNTFPSSRMEASRLVVPIGAIYTPLKERPDAPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITESTIPPELHPLSTTIEYQLAR-------PAPAP---PIFVFVVDTCQEDDSLKAVKDSLILSLSLLPPNALVGLITFGTMAQVHELGYTECAKSYVFRGSKD 195          
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SC23A_DANRE (Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.504e-50
Identity = 90/195 (46.15%), Postives = 128/195 (65.64%), Query Frame = 1
Query:  154 EGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCK--TCTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAAISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKEIS 732
            E  DGVR +WNVWP +++EA++ V+P+A+  +P++  PD+P + Y P+ C   TC A LN   +VD+ AK+W C FCYQRN FPP YA ISE N P EL PQ++T+EY +    Q P N          F++V+DTCM +++L   +  L+ ++ LLP  A+VGL+TFG    VHELG   +SK YVFRG K+++
Sbjct:   12 EDRDGVRFSWNVWPSSRLEATRMVVPVASLFTPLKERPDLPPIQYEPVLCSRATCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISEVNQPAELLPQFSTIEYVVQRGPQMPLN----------FLYVVDTCMEDDDLQALKESLQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLN 196          
BLAST of FC927178 vs. ExPASy Swiss-Prot
Match: SEC23_CRYNE (Protein transport protein SEC23 OS=Cryptococcus neoformans GN=SEC23 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.883e-50
Identity = 93/196 (47.45%), Postives = 132/196 (67.35%), Query Frame = 1
Query:  148 DPEGIDGVRMTWNVWPRTKVEASKCVIPLAASISPIRSHPDIPTLPYAPLRCK--TCTAALNAFARVDFTAKIWICPFCYQRNHFPPHYAA-ISETNLPCELYPQYTTVEYTLPHSMQNPNNPNPDPRLSPVFVFVLDTCMIEEELGYARSELKRAIGLLPDNAMVGLVTFGTQAHVHELGFSDMSKVYVFRGNKE 726
            D E  DGVR +WNVWP +++EA++ V+P++A  +P++   D+P + Y P+ CK  +C A LN + +VD   K+WICPFC QRN FPPHY   +S  NLP EL P++TT+EYTL    Q P          P+F++V+DTC+ E+EL   +  L  ++ LLP NA+VGL+T+GT A VHEL ++D  K YVFRG+K+
Sbjct:    5 DIEDKDGVRFSWNVWPSSRLEATRTVVPISALYTPLKEREDLPPVMYEPVTCKGSSCKAILNPYCQVDVRGKMWICPFCLQRNPFPPHYHQDLSPNNLPPELLPKFTTIEYTLSRPAQIP----------PIFLYVVDTCVDEDELKALKETLVVSLSLLPPNALVGLITYGTMAMVHELAYADCPKAYVFRGSKD 190          
The following BLAST results are available for this feature:
BLAST of FC927178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
SEC23_USTMA2.552e-5349.48Protein transport protein SEC23 OS=Ustilago maydis... [more]
SC23A_XENTR1.400e-5146.15Protein transport protein Sec23A OS=Xenopus tropic... [more]
SEC23_NEOFI5.321e-5149.23Protein transport protein sec23 OS=Neosartorya fis... [more]
SEC23_ASPFU5.321e-5149.23Protein transport protein sec23 OS=Aspergillus fum... [more]
SEC23_COCIM6.949e-5148.96Protein transport protein SEC23 OS=Coccidioides im... [more]
SEC23_ASPCL2.022e-5048.72Protein transport protein sec23 OS=Aspergillus cla... [more]
SC231_SCHPO2.641e-5048.68Protein transport protein sec23-1 OS=Schizosacchar... [more]
SEC23_EMENI4.504e-5047.69Protein transport protein sec23 OS=Emericella nidu... [more]
SC23A_DANRE4.504e-5046.15Protein transport protein Sec23A OS=Danio rerio GN... [more]
SEC23_CRYNE5.883e-5047.45Protein transport protein SEC23 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YM19FM1 TF Citrus clementina cDNA clone KN0AAP7YM19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927178 ID=FC927178; Name=FC927178; organism=Citrus clementina; type=EST; length=736bp
CTCGGTGACCACCTGACCCCGTTCTCTCCCTTTTCAACTGGGGTCGCCAT
TTCTTCCTCAAAGATAAAAAATTCAACAAACGCTCAGTTTTTCATCATCA
CAATCGACGCAATTTAATTATCCATCATGTCGGAAATGGCCAGCACAGAT
CCTGAAGGAATCGACGGAGTCCGTATGACGTGGAACGTTTGGCCGCGTAC
CAAAGTCGAAGCCTCCAAGTGTGTGATCCCACTCGCCGCTTCCATTTCCC
CGATCCGTTCGCATCCCGACATCCCCACGCTCCCTTACGCGCCTTTACGT
TGCAAGACCTGCACCGCTGCTCTCAACGCCTTCGCCCGTGTTGATTTCAC
TGCCAAGATCTGGATCTGCCCCTTCTGCTACCAACGCAATCACTTCCCGC
CGCATTATGCCGCTATTTCCGAAACTAACCTCCCCTGCGAACTCTACCCG
CAGTACACCACCGTGGAGTACACACTCCCTCACAGTATGCAAAATCCGAA
TAATCCTAATCCCGATCCGCGATTATCTCCCGTCTTCGTGTTCGTGCTGG
ACACGTGTATGATCGAGGAGGAATTGGGGTATGCGAGATCCGAGTTGAAG
CGGGCGATCGGCTTGTTGCCGGATAACGCGATGGTGGGGTTAGTTACGTT
TGGAACGCAAGCTCACGTGCATGAATTGGGATTTTCGGACATGTCAAAAG
TGTATGTTTTCAGGGGCAATAAAGAGATTTCAAAGG
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