FC927472

Overview
NameFC927472
Unique NameFC927472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC927472 vs. ExPASy Swiss-Prot
Match: DRPE_CRAPL (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.004e-20
Identity = 56/107 (52.34%), Postives = 65/107 (60.75%), Query Frame = 2 
Query:    2 VGTIPNLVNCTSRSLVAGLLGVESGQDAVIRTLLYERADQIVVPYKMTVAEFTDRISALRNRLGKRGNKDEGLRVPRRLGAENRTDXXXXXXXXXXXXXXRTPPEIL 322
            VG  P L +  SR LVAGLL VE+GQDA+IR LLYERA   V PY +TVAEFT++IS LRN+LG +G KD GL V   LGAE +                RTP   L
Sbjct:  170 VGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCL 276

HSP 2 Score: 23.0978 bits (48), Expect = 1.004e-20
Identity = 10/25 (40.00%), Postives = 13/25 (52.00%), Query Frame = 3 
Query:  324 GLCTELAVKISQEDFFPMVATGQLP 398
            G CT  A++ S   F P   TG+ P
Sbjct:  277 GSCTAAAMRPSPAAFIPKAPTGKSP 301
The following BLAST results are available for this feature:
BLAST of FC927472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DRPE_CRAPL1.004e-2052.34Desiccation-related protein PCC13-62 OS=Craterosti... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YC09FM1 TF Citrus clementina cDNA clone KN0AAP9YC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927472 ID=FC927472; Name=FC927472; organism=Citrus clementina; type=EST; length=534bp
TGTTGGCACCATTCCCAACCTTGTCAACTGCACTTCTCGTAGTTTAGTTG
CAGGGCTCTTAGGAGTGGAGTCTGGACAAGATGCAGTAATACGGACGTTA
CTATACGAGAGGGCTGACCAGATTGTGGTTCCTTATAAGATGACAGTAGC
TGAATTCACTGACCGTATCTCCGCCCTTAGGAACCGGCTTGGCAAGCGCG
GAAACAAAGATGAGGGCCTAAGGGTGCCACGGAGACTTGGCGCTGAGAAC
AGGACAGATAGTAACATTCTATCAGCCAATGCTAATTCCCTATCCTACTC
TCGAACTCCGCCGGAGATTTTAAGGATTGTGTACGGAACTGGCAGTGAAA
ATAAGCCAGGAGGATTTTTTCCCAATGGTGGCAACGGGGCAGTTGCCAAG
AGGTTTCTTGCTGCACTTTAATCATTGCTCATTAGTATGAACTTTCAGTT
ACGTTTACGTACCAGTTTAACGGCTGTCTACTGTGAATCACAGTCTGTGA
TTGATTCCCAGGGATTAATTAGAATAAATGGAAG
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