FC927901

Overview
NameFC927901
Unique NameFC927901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.263e-57
Identity = 120/156 (76.92%), Postives = 122/156 (78.21%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA+SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRAD
Sbjct:    9 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.263e-57
Identity = 120/156 (76.92%), Postives = 122/156 (78.21%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA+SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRAD
Sbjct:   10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.263e-57
Identity = 120/156 (76.92%), Postives = 122/156 (78.21%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA+SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRAD
Sbjct:   10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.263e-57
Identity = 120/156 (76.92%), Postives = 122/156 (78.21%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA+SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRAD
Sbjct:   10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.822e-56
Identity = 119/156 (76.28%), Postives = 122/156 (78.21%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA+SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRA+
Sbjct:   10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.822e-56
Identity = 119/156 (76.28%), Postives = 122/156 (78.21%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA+SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRA+
Sbjct:   11 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL2_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.822e-56
Identity = 119/156 (76.28%), Postives = 122/156 (78.21%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA+SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRA+
Sbjct:   10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.822e-56
Identity = 119/156 (76.28%), Postives = 122/156 (78.21%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKA+SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRA+
Sbjct:    9 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.302e-56
Identity = 118/156 (75.64%), Postives = 121/156 (77.56%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK +SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRA+
Sbjct:   10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
[Close]
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.302e-56
Identity = 118/156 (75.64%), Postives = 121/156 (77.56%), Query Frame = 2 
Query:    2 TAPFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGPSRAD 469
            TAPFF FLGA AALV SCMGAAYGTAKSG+ VASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK +SYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAG SRA+
Sbjct:    9 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
The following BLAST results are available for this feature:
BLAST of FC927901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
VATL_PHAAU6.263e-5776.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MESCR6.263e-5776.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_KALDA6.263e-5776.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BETVU6.263e-5776.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_GOSHI1.822e-5676.28V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL4_ARATH1.822e-5676.28V-type proton ATPase 16 kDa proteolipid subunit c4... [more]
VATL2_ARATH1.822e-5676.28V-type proton ATPase 16 kDa proteolipid subunit c2... [more]
VATL1_ARATH1.822e-5676.28V-type proton ATPase 16 kDa proteolipid subunit c1... [more]
VATL_TOBAC5.302e-5675.64V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC5.302e-5675.64V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YE02FM1 TF Citrus clementina cDNA clone KN0AAP12YE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927901 ID=FC927901; Name=FC927901; organism=Citrus clementina; type=EST; length=625bp
AACCGCTCCTTTCTTCCGCTTTCTCGGCGCCCCTGCCGCCCTAGTCCTTT
CCTGTATGGGAGCCGCCTACGGAACGGCCAAGAGTGGCCTCCGTGTGGCC
TCCATGGGAGTGATGAGGCCGGAGCTTGTGATGAAATCGATCGTGCCCGT
TGTTATGGCGGGAGTTTTGGGTATTTACGGTTTGATTATTGCTGTTATTA
TTAGTACCGGAATTAACCCTAAGGCCCAATCTTATTACCTTTTCGATGGC
TACGCGCATCTCTCTTCTGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGC
TGGTATGGCAATTGGGATCGTCGGTGATGCTGGTGTCAGAGCCAATGCTC
AACAGCCGAAGCTTTTCGTTGGGATGATCCTCATTCTGATCTTTGCTGAA
GCGCTGGCACTTTATGGACTTATTGTTGGTATCATTCTTTCTTCTCGTGC
TGGTCCGTCCAGAGCAGACTAGAAGAGGATGCTTTGCTTGGTGGTTATTT
GGCCTGTTGTGTTCCATTAAGAAGAATTCAGTTCATATTGCCTGTGACGG
GAGGTGGTAGTCTGCGTTGGGTAGTGTTTTTCTTTTTCCACTTAAAAGTT
ATTGTCCGTGGTGTGATTGTTCCAC
back to top