FC927918

Overview
NameFC927918
Unique NameFC927918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length428
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB1_GOSHI (V-type proton ATPase subunit B 1 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.666e-53
Identity = 103/115 (89.57%), Postives = 108/115 (93.91%), Query Frame = 2
Query:   83 MGVAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDN 427
            MG+A+N   MEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPV LDMLGRIFNGSGKPIDN
Sbjct:    1 MGMAENTNGMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB1_HORVU (V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.176e-53
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 2
Query:   83 MGVAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDN 427
            MG+ +   DMEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPV LDMLGRIFNGSGKPIDN
Sbjct:    1 MGLVKEGADMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB3_ARATH (V-type proton ATPase subunit B3 OS=Arabidopsis thaliana GN=VHA-B3 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.411e-52
Identity = 100/113 (88.50%), Postives = 107/113 (94.69%), Query Frame = 2
Query:   89 VAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDN 427
            + + ++DMEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDG+ RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV LDMLGRIFNGSGKPIDN
Sbjct:    1 MVETSIDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 113          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB2_ARATH (V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.842e-52
Identity = 102/115 (88.70%), Postives = 109/115 (94.78%), Query Frame = 2
Query:   83 MGVAQNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDN 427
            MG A+NN++ME GTLE+ MEYRTV+GVAGPLVIL+KVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPV LDMLGRIFNGSGKPIDN
Sbjct:    1 MGAAENNLEME-GTLEIGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 114          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB1_ARATH (V-type proton ATPase subunit B1 OS=Arabidopsis thaliana GN=VHA-B1 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 3.143e-52
Identity = 100/110 (90.91%), Postives = 106/110 (96.36%), Query Frame = 2
Query:   98 NNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDN 427
            N++D+EEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDG+ RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV LDMLGRIFNGSGKPIDN
Sbjct:    4 NDLDIEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 113          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB2_HORVU (V-type proton ATPase subunit B 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.037e-51
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 2
Query:  107 DMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDN 427
            +MEEGTLE+ MEYRTV+GVAGPLVILDKVKGPKY EIVNIRLGDGT RRGQVLEVDGEKAVVQVFEGTSGIDNK+TTVQFTGEVLKTPV LDMLGRIFNGSGKPIDN
Sbjct:    4 EMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 110          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB2_ACEAT (V-type proton ATPase subunit B 2 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.282e-37
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 2
Query:  128 EVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            E  +EYRTV GV+GPLV+++ VK PK+ EIVNIRLG+GT RRGQVLEVDG +AVVQVFEGTSGIDN+ TT+QFTGEVL TPV  DMLGR+FNGSGKPID
Sbjct:   21 EPRIEYRTVGGVSGPLVVVELVKRPKFAEIVNIRLGNGTSRRGQVLEVDGNRAVVQVFEGTSGIDNRNTTLQFTGEVLSTPVSKDMLGRVFNGSGKPID 119          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB1_ACEAT (V-type proton ATPase subunit B 1 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.282e-37
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 2
Query:  128 EVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            E  +EYRTV GV+GPLV+++ VK PK+ EIVNIRLG+GT RRGQVLEVDG +AVVQVFEGTSGIDN+ TT+QFTGEVL TPV  DMLGR+FNGSGKPID
Sbjct:   21 EPRIEYRTVGGVSGPLVVVELVKRPKFAEIVNIRLGNGTSRRGQVLEVDGNRAVVQVFEGTSGIDNRNTTLQFTGEVLSTPVSKDMLGRVFNGSGKPID 119          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_CYACA (V-type proton ATPase subunit B OS=Cyanidium caldarium PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 9.186e-36
Identity = 69/96 (71.88%), Postives = 84/96 (87.50%), Query Frame = 2
Query:  137 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            +EYRTV+ V GPL+IL  VK P++ EIVN+ LGDG++RRGQVLE++ +KAVVQ+FEGT+GIDNK T  QFTGE+LKTPV LDMLGR+FNGSGKPID
Sbjct:   21 LEYRTVSAVNGPLIILQNVKSPRFAEIVNVTLGDGSVRRGQVLEINQDKAVVQIFEGTTGIDNKKTVCQFTGEILKTPVSLDMLGRVFNGSGKPID 116          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_YEAST (V-type proton ATPase subunit B OS=Saccharomyces cerevisiae GN=VMA2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.467e-33
Identity = 72/113 (63.72%), Postives = 91/113 (80.53%), Query Frame = 2
Query:   92 AQNNVDMEEG-TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPIDN 427
            A N   +E+G  ++  + Y TV+GV GPLVIL+KVK P+Y EIVN+ L DGT+R+GQVLE+ G++A+VQVFEGTSGID K TTV+FTGE L+ PV  DMLGRIF+GSG+PIDN
Sbjct:   10 AINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDGTVRQGQVLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPIDN 122          
The following BLAST results are available for this feature:
BLAST of FC927918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
VATB1_GOSHI1.666e-5389.57V-type proton ATPase subunit B 1 OS=Gossypium hirs... [more]
VATB1_HORVU2.176e-5388.70V-type proton ATPase subunit B 1 OS=Hordeum vulgar... [more]
VATB3_ARATH1.411e-5288.50V-type proton ATPase subunit B3 OS=Arabidopsis tha... [more]
VATB2_ARATH1.842e-5288.70V-type proton ATPase subunit B2 OS=Arabidopsis tha... [more]
VATB1_ARATH3.143e-5290.91V-type proton ATPase subunit B1 OS=Arabidopsis tha... [more]
VATB2_HORVU2.037e-5192.52V-type proton ATPase subunit B 2 OS=Hordeum vulgar... [more]
VATB2_ACEAT1.282e-3776.77V-type proton ATPase subunit B 2 OS=Acetabularia a... [more]
VATB1_ACEAT1.282e-3776.77V-type proton ATPase subunit B 1 OS=Acetabularia a... [more]
VATB_CYACA9.186e-3671.88V-type proton ATPase subunit B OS=Cyanidium caldar... [more]
VATB_YEAST1.467e-3363.72V-type proton ATPase subunit B OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE12FM1 TF Citrus clementina cDNA clone KN0AAP12YE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927918 ID=FC927918; Name=FC927918; organism=Citrus clementina; type=EST; length=428bp
CCCTCTCCCTCTCTTTTTCTCTCTCTCTCTCTCTCACTCACAGAGATCAC
AAGAAAGACCAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAAC
AATGTTGACATGGAGGAGGGTACTCTGGAAGTCGCCATGGAGTACAGAAC
GGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGAC
CCAAATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGA
CGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTT
TGAAGGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAG
GGGAGGTTCTGAAGACTCCTGTCCCATTGGATATGCTTGGGCGCATTTTT
AATGGTTCTGGGAAACCCATTGATAATG
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