FC928188

Overview
NameFC928188
Unique NameFC928188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.287e-24
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   19 GDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD
Sbjct:   26 GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGD 88

HSP 2 Score: 30.4166 bits (67), Expect = 1.287e-24
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 2 
Query:  215 KNVMTSPVKSKIVDKDRIKIHGF 283
            KNV T  V++ +V KD IKIHGF
Sbjct:   91 KNVSTFLVQAGLVKKDNIKIHGF 113
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.676e-24
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   19 GDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD
Sbjct:   26 GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGD 88

HSP 2 Score: 30.4166 bits (67), Expect = 1.676e-24
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 2 
Query:  215 KNVMTSPVKSKIVDKDRIKIHGF 283
            KNV T  V++ +V KD IKIHGF
Sbjct:   91 KNVSTFLVQAGLVKKDNIKIHGF 113
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.181e-24
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   13 APGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD
Sbjct:   26 AAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 90

HSP 2 Score: 27.7202 bits (60), Expect = 2.181e-24
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 2 
Query:  215 KNVMTSPVKSKIVDKDRIKIHGF 283
            KNV    V++ IV K+ IKIHGF
Sbjct:   93 KNVSNFLVQAGIVKKEHIKIHGF 115
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.181e-24
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   13 APGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD
Sbjct:   26 AAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 90

HSP 2 Score: 27.7202 bits (60), Expect = 2.181e-24
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 2 
Query:  215 KNVMTSPVKSKIVDKDRIKIHGF 283
            KNV    V++ IV K+ IKIHGF
Sbjct:   93 KNVSNFLVQAGIVKKEHIKIHGF 115
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.181e-24
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   13 APGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD
Sbjct:   26 AAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 90

HSP 2 Score: 27.7202 bits (60), Expect = 2.181e-24
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 2 
Query:  215 KNVMTSPVKSKIVDKDRIKIHGF 283
            KNV    V++ IV K+ IKIHGF
Sbjct:   93 KNVSNFLVQAGIVKKEHIKIHGF 115
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.181e-24
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   13 APGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD
Sbjct:   26 AAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 90

HSP 2 Score: 27.7202 bits (60), Expect = 2.181e-24
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 2 
Query:  215 KNVMTSPVKSKIVDKDRIKIHGF 283
            KNV    V++ IV K+ IKIHGF
Sbjct:   93 KNVSNFLVQAGIVKKEHIKIHGF 115
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.839e-24
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   19 GDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            G K YVH+RVQQRNG+K LTTVQGLK+D+ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD
Sbjct:   26 GTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGD 88

HSP 2 Score: 28.1054 bits (61), Expect = 2.839e-24
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2 
Query:  215 KNVMTSPVKSKIVDKDRIKIHGF 283
            KNV +  V++ IV K+ IKIHGF
Sbjct:   91 KNVSSFLVQAGIVKKENIKIHGF 113
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.150e-24
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:   19 GDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD
Sbjct:   26 GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGD 88

HSP 2 Score: 28.1054 bits (61), Expect = 8.150e-24
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2 
Query:  215 KNVMTSPVKSKIVDKDRIKIHGF 283
            KNV T  V++ +V KD I+IHGF
Sbjct:   91 KNVSTFLVQAGLVKKDDIQIHGF 113
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.797e-23
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   25 KGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            K YVH+R+QQRNG+K LTTVQGLK++  Y KILKDLKK  CCNG VVNDK LGKVIQLQGD
Sbjct:   28 KEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGD 88

HSP 2 Score: 28.8758 bits (63), Expect = 1.797e-23
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 2 
Query:  215 KNVMTSPVKSKIVDKDRIKIHGF 283
            KNV T  V++ IV KD+IK+H F
Sbjct:   91 KNVSTFIVQAGIVKKDQIKVHNF 113
[Close]
BLAST of FC928188 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.395e-17
Identity = 36/59 (61.02%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   31 YVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 207
            Y+H+R+QQRNG+K LTTVQG+ E++  ++ILK LKK+F CNGN+V D  +G++IQLQGD
Sbjct:   25 YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGD 83
The following BLAST results are available for this feature:
BLAST of FC928188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI12_ARATH1.287e-2476.19Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH1.676e-2476.19Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_SPOST2.181e-2475.38Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ2.181e-2475.38Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI2.181e-2475.38Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE2.181e-2475.38Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_SALBA2.839e-2477.78Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_BRAOL8.150e-2476.19Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR1.797e-2377.05Protein translation factor SUI1 homolog OS=Pimpine... [more]
SUI1_YEAST5.395e-1761.02Eukaryotic translation initiation factor eIF-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP4YM20FM1 TF Citrus clementina cDNA clone KN0AAP4YM20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928188 ID=FC928188; Name=FC928188; organism=Citrus clementina; type=EST; length=381bp
AAGGACNCCCATGCCCCAGGTGACAAAGGGTACGTGCATCTCCGCGTACA
GCAGAGGAATGGAAAGAAGTGCTTAACAACTGTTCAAGGACTTAAAGAGG
ATTTTGGCTACCAGAAGATCCTCAAGGACCTCAAAAAGGAGTTCTGTTGT
AACGGGAATGTTGTCAATGACAAAGTTCTCGGGAAGGTGATTCAGCTTCA
AGGTGATCTTTTTGAAGAATGTTATGACTAGTCCCGTTAAGAGTAAGATT
GTGGACAAGGATCGCATCAAGATTCATGGTTTCTAAGCAAATGTGGTGAT
TAATATATATGGTTATGGTAAAACATATGTGGTCTTATGTGATCTGCATA
CCATATCTGTAGTCTGTTCTTGTTGAGGTTT
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