FC928661

Overview
NameFC928661
Unique NameFC928661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length354
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.012e-47
Identity = 87/108 (80.56%), Postives = 98/108 (90.74%), Query Frame = 2
Query:   29 LAKLFQGLRRRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGKR 352
            + ++     ++GFKLTGLKLF CPK+LAEEHYKDL SKPFFPKLI+YITSGPVVCMAWEG GVVASARKLIG+T+PL+AEPGTIRGDLAVQTGRNV HGSDSP+NGKR
Sbjct:  101 VGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKR 208          
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.462e-46
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 2
Query:   29 LAKLFQGLRRRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGKR 352
            + ++     ++GFKL GLK+FQCPK+LAEEHYKDL++K FFP LIEYITSGPVVCMAWEG GVVASARKLIG TDPL AEPGTIRGDLAVQTGRN+ HGSDSPENGKR
Sbjct:  100 VGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKR 207          
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.334e-44
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 2
Query:   29 LAKLFQGLRRRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGKR 352
            + ++     ++GFKLTGLKLFQC K+LAEEHYK LN K FFPKLIEYITSGPVV MAWEG GVV SARKLIG+TDPL AEPGTIRGD AVQTGRN+ HGSDSPENG+R
Sbjct:   99 VGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGDFAVQTGRNIIHGSDSPENGER 206          
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.791e-44
Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = 2
Query:   29 LAKLFQGLRRRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGKR 352
            + ++     ++GFKL GLK++ CPK+LAEEHYKDL +K F+ KLI+YITSGPVVCMAWEG GVVAS+RKLIG+TDPL AEPGTIRGDLAVQTGRNV HGSDSP+NGKR
Sbjct:  102 VGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKR 209          
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.522e-36
Identity = 64/105 (60.95%), Postives = 82/105 (78.10%), Query Frame = 2
Query:   38 LFQGLRRRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGKR 352
            + Q   ++G+ L GLKL +  ++LAE+HY +   KPFFP L+ +ITSGPVV M WEG GV+A+ARKLIG+T+PL+AEPGT+RGD AV  GRNV HGSDSPEN +R
Sbjct:   21 IIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVGRNVIHGSDSPENAER 125          

HSP 2 Score: 28.8758 bits (63), Expect = 6.522e-36
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:    1 KPDAFQGGQVGEIISRFEKK 60
            KPD  Q G VG II RFE+K
Sbjct:    9 KPDGVQRGLVGTIIQRFEQK 28          
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK_SYNPX (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ndk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.835e-33
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 2
Query:   56 RRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGK 349
            R+GFKL GLK     + LAE+HY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL AEPGTIRGDLAV  GRNV HGSD+PE  +
Sbjct:   28 RKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDAPETAE 125          

HSP 2 Score: 30.8018 bits (68), Expect = 4.835e-33
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 KPDAFQGGQVGEIISRFEKK 60
            KPD  Q G VGEI+ RFE+K
Sbjct:   10 KPDGVQRGLVGEILGRFERK 29          
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.044e-33
Identity = 63/108 (58.33%), Postives = 81/108 (75.00%), Query Frame = 2
Query:   29 LAKLFQGLRRRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGKR 352
            + ++ +    +GFKL GLKL    KDLAE+HY +   KPFFP L+++ITSGPVV M WEG GVVASARK+IG+T+PL++EPGTIRGD  V  GRN+ HGSD+ E  +R
Sbjct:   18 VGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYGVDIGRNIIHGSDAVETAQR 125          
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.067e-32
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 2
Query:   56 RRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGK 349
            R+GFKL GLK     +DLA EHY     +PFF  L+++ITSGPV+ M WEG GV+ASARKLIG+T PL AEPGTIRGDLAV  GRNV HGSD P+  +
Sbjct:   29 RKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQ 126          

HSP 2 Score: 30.8018 bits (68), Expect = 1.067e-32
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 KPDAFQGGQVGEIISRFEKK 60
            KPD  Q G VGEI+ RFE+K
Sbjct:   11 KPDGVQRGLVGEILGRFERK 30          
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK_SYNS9 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902) GN=ndk PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.391e-32
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 2
Query:   56 RRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGK 349
            R+GFKL GLK     + LAEEHY     +PFF  L+ +ITSGPVV M WEG GV+ASARKLIG+T PL +EPGTIRGDLAV  GRNV HGSD+PE  +
Sbjct:   28 RKGFKLVGLKQITPSRALAEEHYGVHKERPFFAGLVGFITSGPVVAMVWEGDGVIASARKLIGATKPLESEPGTIRGDLAVNIGRNVIHGSDAPETAE 125          

HSP 2 Score: 30.8018 bits (68), Expect = 1.391e-32
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 KPDAFQGGQVGEIISRFEKK 60
            KPD  Q G VGEI+ RFE+K
Sbjct:   10 KPDGVQRGLVGEILGRFERK 29          
BLAST of FC928661 vs. ExPASy Swiss-Prot
Match: NDK_SYNSC (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9605) GN=ndk PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.003e-32
Identity = 62/98 (63.27%), Postives = 73/98 (74.49%), Query Frame = 2
Query:   56 RRGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLHAEPGTIRGDLAVQTGRNVFHGSDSPENGK 349
            R+GFKL GLK     + LAE+HY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL AEPGTIRGDLAV  GRNV HGSD+ E  +
Sbjct:   28 RKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDAAETAQ 125          

HSP 2 Score: 30.8018 bits (68), Expect = 4.003e-32
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:    1 KPDAFQGGQVGEIISRFEKK 60
            KPD  Q G VGEI+ RFE+K
Sbjct:   10 KPDGVQRGLVGEILGRFERK 29          
The following BLAST results are available for this feature:
BLAST of FC928661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK2_TOBAC1.012e-4780.56Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_ARATH1.462e-4678.70Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK2_PEA2.334e-4476.85Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_SPIOL6.791e-4474.07Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_THEEB6.522e-3660.95Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_SYNPX4.835e-3364.29Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_CYAP47.044e-3358.33Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_PROMM1.067e-3263.27Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNS91.391e-3264.29Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNSC4.003e-3263.27Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YH17FM1 TF Citrus clementina cDNA clone KN0AAP6YH17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928661 ID=FC928661; Name=FC928661; organism=Citrus clementina; type=EST; length=354bp
AAACCAGATGCCTTTCAAGGTGGTCAGGTTGGCGAAATTATTTCAAGGTT
TGAGAAGAAGAGGATTCAAACTGACTGGCTTGAAGCTCTTTCAATGCCCG
AAAGATTTAGCTGAGGAGCACTATAAGGATCTCAATTCCAAACCATTTTT
TCCTAAACTGATTGAGTACATTACTTCAGGACCAGTTGTATGTATGGCAT
GGGAGGGTGCTGGTGTGGTGGCATCTGCACGTAAGTTAATAGGGTCAACG
GATCCTCTTCACGCTGAACCAGGCACAATAAGAGGGGATCTTGCTGTTCA
AACTGGAAGGAATGTTTTCCATGGGAGTGACAGCCCTGAGAATGGCAAGC
GTGA
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