FC928902

Overview
NameFC928902
Unique NameFC928902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RNF5_CAEEL (RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.013e-28
Identity = 85/255 (33.33%), Postives = 114/255 (44.71%), Query Frame = 1
Query:  112 TSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKSSTDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHXXXXXXXXXXXXXXXXXXXXXXRFGNFTLSAAFGGLIPPLFNLQVHGFPDPTMYGPAASFPYGFTNSFHG----------------------------GHAHGYPQH-------TGQGQQDYYLKRLLLFIGFCVLLVLIW 771
            T   ++ P S++N + E+  FECNIC D A+D +V+LCGHLFCWPCL +WL    N + CPVCK+ I+  K+VP+YGRG  S+DPR K      +P RP GQR E    P P                         FG  T++    GL P +F L       P + G    FP  F  SF G                            GH HG   H       +   Q++ YL  +  +IGF +L  L++
Sbjct:    5 TKAPSEEPTSSSNKD-ESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE----PPPQSFAGFNWGGDGGMMGGGGPNVHFSFGIGTVN----GLFPLMFML-------PFIQG---IFPLSFVASFFGNGNQGAAAAGGGNGGGNDGNDGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEYLSNIFKYIGFFMLFWLLF 234          
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RN185_DANRE (RING finger protein 185 OS=Danio rerio GN=rnf185 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.559e-27
Identity = 83/239 (34.73%), Postives = 109/239 (45.61%), Query Frame = 1
Query:   91 ASSFGESTSRSAQNPYSNNNSNSEAGN-------FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPETAPPPEPSHXXXXXXXXXXXXXXXXXXXXXXRFGNFTLSAAFG----GLIPPLFNLQVHGFPDPTMYGPAASFPYGFTNSFHGGHAHGYPQHTGQGQQDYYLKRLLLFIGFCVLLVLIW 771
            A+S   S+S S+    +N  S  E+G        FECNIC D ++D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE    PE                           G F +S   G    G+    FN+   G P P                     A G PQHT     + +L RL LF+    LL++ W
Sbjct:    5 AASESSSSSSSSSAGAANGQSAGESGGGGAQDSTFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE----PENRGGFQGFGFGD---------------GGFQMSFGIGAFPFGIFATAFNIN-DGRPPPA--------------------APGTPQHT----DEQFLSRLFLFV---ALLIMFW 190          
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RN185_RAT (RING finger protein 185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   94 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 426
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASASTENSSAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RN185_MOUSE (RING finger protein 185 OS=Mus musculus GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   94 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 426
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RN185_PONAB (RING finger protein 185 OS=Pongo abelii GN=RNF185 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   94 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 426
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RN185_HUMAN (RING finger protein 185 OS=Homo sapiens GN=RNF185 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   94 SSFGESTSRSAQN-----PYSNNNSNSEAGN----FECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 426
            +S G S S S +N     P  ++N   E+G     FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:    2 ASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 116          
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RN185_CHICK (RING finger protein 185 OS=Gallus gallus GN=RNF185 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.706e-26
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   94 SSFGESTSRSAQNPYSNNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRGKS-STDPRSKSIPGVNIPNRPTGQRPE 426
            SS    TS S+ +  + +N+N +   FECNIC D A+D +++LCGHLFCWPCL++WL    N + CPVCKA I  +K++PLYGRG +   DPR K+      P RP GQRPE
Sbjct:   14 SSSTGGTSGSSSSNGAGDNTNQD-NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE 118          
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RNF5_RAT (E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.729e-23
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  142 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRP 423
            N      +  FECNIC + A++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG +   DPR K+      P RP GQRP
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RNF5_MOUSE (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.729e-23
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  142 NNNSNSEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRP 423
            N      +  FECNIC + A++ +V++CGHL+CWPCL++WL    + +ECPVCKA I  EK+VPLYGRG +   DPR K+      P RP GQRP
Sbjct:   15 NRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
BLAST of FC928902 vs. ExPASy Swiss-Prot
Match: RNF5_HUMAN (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.870e-23
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  133 PYSNNNSNSEAG-NFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHGHSNYRECPVCKATIEEEKLVPLYGRG-KSSTDPRSKSIPGVNIPNRPTGQRP 423
            P   N     AG  FECNIC + A++ +V++CGHL+CWPCL++WL      +ECPVCKA I  EK+VPLYGRG +   DPR K+      P RP GQRP
Sbjct:   11 PEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKT------PPRPQGQRP 103          
The following BLAST results are available for this feature:
BLAST of FC928902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RNF5_CAEEL1.013e-2833.33RING finger protein 5 OS=Caenorhabditis elegans GN... [more]
RN185_DANRE5.559e-2734.73RING finger protein 185 OS=Danio rerio GN=rnf185 P... [more]
RN185_RAT1.238e-2648.76RING finger protein 185 OS=Rattus norvegicus GN=Rn... [more]
RN185_MOUSE1.238e-2648.76RING finger protein 185 OS=Mus musculus GN=Rnf185 ... [more]
RN185_PONAB2.759e-2648.76RING finger protein 185 OS=Pongo abelii GN=RNF185 ... [more]
RN185_HUMAN2.759e-2648.76RING finger protein 185 OS=Homo sapiens GN=RNF185 ... [more]
RN185_CHICK4.706e-2650.00RING finger protein 185 OS=Gallus gallus GN=RNF185... [more]
RNF5_RAT3.729e-2350.53E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegi... [more]
RNF5_MOUSE3.729e-2350.53E3 ubiquitin-protein ligase RNF5 OS=Mus musculus G... [more]
RNF5_HUMAN4.870e-2351.52E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3BA12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928902 ID=FC928902; Name=FC928902; organism=Citrus clementina; type=EST; length=885bp
GGCACGAGGGTTTCTCCCAGCCTCTGTTTTGACTTTGTGGATCGATCGAT
TCGCAAATCGGTCGGTCGATTTCTTCATTTTGAAGTGATGGCAAGTAGTT
TTGGGGAATCAACAAGCAGGTCGGCCCAAAACCCTTATTCTAACAACAAT
AGTAATAGTGAAGCTGGTAACTTCGAATGCAATATTTGCTTTGACTTAGC
TCAAGATCCTATTGTAACTTTGTGCGGTCATCTTTTCTGCTGGCCCTGCC
TTTACAAATGGCTCCACGGTCACTCAAATTATCGGGAGTGCCCAGTGTGT
AAGGCCACAATTGAGGAGGAGAAGCTCGTGCCCTTGTATGGCAGGGGAAA
ATCATCAACTGACCCCAGATCAAAATCCATCCCTGGTGTTAATATTCCGA
ACCGTCCTACAGGGCAGAGGCCTGAAACTGCTCCTCCACCAGAGCCAAGT
CATTTTCAGCATCAACATGGATTTGGCTTTATGGGAGGCTTAGGTGGGTT
TGCTCCAATGGCCGCAGCAAGATTTGGGAATTTCACTTTATCTGCAGCTT
TTGGTGGCCTCATCCCTCCATTATTTAATCTTCAAGTGCATGGATTCCCA
GATCCTACCATGTATGGTCCAGCTGCCAGCTTTCCTTATGGGTTTACGAA
TTCGTTTCATGGTGGTCATGCACATGGATATCCACAGCATACGGGTCAGG
GGCAACAGGATTATTATCTGAAAAGACTGCTTTTGTTTATTGGTTTTTGT
GTTCTCCTTGTGCTTATTTGGCAGTAAACATCTGCAATTTGTCCGGAACT
GCTAGCAGATGTTTAGGCATGTCAATTTTATATGTCTGTCAATCTGTTAG
TTGGGGATTCTCTTACCTTTTTTCGGTTTTTTTTT
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