FC929324

Overview
NameFC929324
Unique NameFC929324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length376
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.388e-18
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            +YEKVEKIGEGTYGVVYKAR+ VTNETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    3 QYEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREIS 53          
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.388e-18
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            +YEKVEKIGEGTYGVVYKAR+ VTNETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    3 QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREIS 53          
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDC2_CHERU (Cell division control protein 2 homolog OS=Chenopodium rubrum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.388e-18
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            +YEKVEKIGEGTYGVVYKAR+ VTNETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    3 QYEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTAIREIS 53          
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.388e-18
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            +YEKVEKIGEGTYGVVYKAR+ VTNETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    3 QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREIS 53          
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDC22_MEDSA (Cell division control protein 2 homolog 2 OS=Medicago sativa GN=CDC2B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.440e-17
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            +YEKVEKIGEGTYGVVYKAR+  TNETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    3 QYEKVEKIGEGTYGVVYKARDRATNETIALKKIRLEQEDEGVPSTAIREIS 53          
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            +YEKVEKIGEGTYGVVYKAR+ VT+ETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    3 QYEKVEKIGEGTYGVVYKARDRVTDETIALKKIRLEQEDEGVPSTAIREIS 53          
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.274e-17
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            +YEK EKIGEGTYGVVY+AR+ VTNETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    3 QYEKEEKIGEGTYGVVYRARDKVTNETIALKKIRLEQEDEGVPSTAIREIS 53          
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            +YEKVEKIGEGTYGVVYKA +  TNETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    3 QYEKVEKIGEGTYGVVYKALDKATNETIALKKIRLEQEDEGVPSTAIREIS 53          
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDC21_MEDSA (Cell division control protein 2 homolog 1 (Fragment) OS=Medicago sativa GN=CDC2A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.698e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1
Query:  229 EKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            E VEKIGEGTYGVVYKAR+ VTNETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    2 ENVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREIS 50          
BLAST of FC929324 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETISLKKIRREQEDEGVPSTAIIEIS 375
            +YEKVEKIGEGTYGVVYK ++  TNETI+LKKIR EQEDEGVPSTAI EIS
Sbjct:    3 QYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREIS 53          
The following BLAST results are available for this feature:
BLAST of FC929324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CDKA1_ARATH8.388e-1888.24Cyclin-dependent kinase A-1 OS=Arabidopsis thalian... [more]
CDC2_VIGAC8.388e-1888.24Cell division control protein 2 homolog OS=Vigna a... [more]
CDC2_CHERU8.388e-1888.24Cell division control protein 2 homolog OS=Chenopo... [more]
CDC2A_ANTMA8.388e-1888.24Cell division control protein 2 homolog A OS=Antir... [more]
CDC22_MEDSA2.440e-1786.27Cell division control protein 2 homolog 2 OS=Medic... [more]
CDC2_VIGUN3.187e-1786.27Cell division control protein 2 homolog OS=Vigna u... [more]
CDKA1_ORYSJ9.274e-1784.31Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDC2_MAIZE1.582e-1684.31Cell division control protein 2 homolog OS=Zea may... [more]
CDC21_MEDSA2.698e-1687.76Cell division control protein 2 homolog 1 (Fragmen... [more]
CDKA2_ORYSJ3.524e-1682.35Cyclin-dependent kinase A-2 OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3DG04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929324 ID=FC929324; Name=FC929324; organism=Citrus clementina; type=EST; length=376bp
GGCACGAGGCTAAAACTCACTTCTTTCACCGCCGCCGCTGCCTCCAATCA
CCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATCGTCCTCGCG
TCTGTTACTGTATTATGCATTTGTATTTTTCTCTTTCGTAAGCGGTTAAT
TTTTTCTTCATAACACACTGCCGCCACCTACGCCGTCGATTCGTGCCGTT
CTTGTCGCCGTCCGTCGGTAGCAAGTATGAAAAGGTTGAGAAGATTGGTG
AAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAATGAG
ACAATATCATTGAAGAAGATCCGCCGTGAGCAGGAAGATGAAGGTGTGCC
TAGCACCGCGATTATAGAAATTTCCC
back to top