FC929363

Overview
NameFC929363
Unique NameFC929363
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9276 contig Ccv1_Contig9276:3..508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929363 vs. ExPASy Swiss-Prot
Match: RBOHC_ARATH (Respiratory burst oxidase homolog protein C OS=Arabidopsis thaliana GN=RBOHC PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.788e-18
Identity = 38/48 (79.17%), Postives = 47/48 (97.92%), Query Frame = 1
Query:    1 KRVSLNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 144
            KR++++HP+++VGVFYCGAPALTKELRHLALDF+HKTST+F FHKENF
Sbjct:  858 KRIAMDHPNTKVGVFYCGAPALTKELRHLALDFTHKTSTRFSFHKENF 905          
BLAST of FC929363 vs. ExPASy Swiss-Prot
Match: RBOHD_SOLTU (Respiratory burst oxidase homolog protein D OS=Solanum tuberosum GN=RBOHD PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.211e-18
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 KRVSLNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 144
            KR++LNH D+RVGVFYCGAPALTK L  LALDFSHKTSTKFDFHKENF
Sbjct:  811 KRIALNHTDARVGVFYCGAPALTKVLGQLALDFSHKTSTKFDFHKENF 858          
BLAST of FC929363 vs. ExPASy Swiss-Prot
Match: RBOHC_SOLTU (Respiratory burst oxidase homolog protein C OS=Solanum tuberosum GN=RBOHC PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.211e-18
Identity = 39/48 (81.25%), Postives = 46/48 (95.83%), Query Frame = 1
Query:    1 KRVSLNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 144
            KR++LNHP+++VGVFYCGAPALTKEL+  AL+FSHKTSTKFDFHKENF
Sbjct:  891 KRIALNHPEAKVGVFYCGAPALTKELKQHALNFSHKTSTKFDFHKENF 938          
BLAST of FC929363 vs. ExPASy Swiss-Prot
Match: RBOHA_ARATH (Respiratory burst oxidase homolog protein A OS=Arabidopsis thaliana GN=RBOHA PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 KRVSLNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 144
            KR+++NHP +RVGVFYCGA  L KELRHL+LDFSHKTSTKF FHKENF
Sbjct:  855 KRIAVNHPKTRVGVFYCGAAGLVKELRHLSLDFSHKTSTKFIFHKENF 902          
BLAST of FC929363 vs. ExPASy Swiss-Prot
Match: RBOHB_SOLTU (Respiratory burst oxidase homolog protein B OS=Solanum tuberosum GN=RBOHB PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.917e-16
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    1 KRVSLNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 144
            KRV++NHPD R+GVFYCG   L  ELRHL+ DFSHKT TKF+FHKENF
Sbjct:  820 KRVTINHPDQRIGVFYCGPQGLVGELRHLSQDFSHKTGTKFEFHKENF 867          
BLAST of FC929363 vs. ExPASy Swiss-Prot
Match: RBOHG_ARATH (Putative respiratory burst oxidase homolog protein G OS=Arabidopsis thaliana GN=RBOHG PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.692e-15
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 KRVSLNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 144
            K+++++HP + VGVFYCGAP LTKELR LAL+F+HKTST+F FHKENF
Sbjct:  816 KQIAMDHPGANVGVFYCGAPVLTKELRQLALEFTHKTSTRFSFHKENF 863          
BLAST of FC929363 vs. ExPASy Swiss-Prot
Match: RBOHD_ARATH (Respiratory burst oxidase homolog protein D OS=Arabidopsis thaliana GN=RBOHD PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.432e-14
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    1 KRVSLNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 144
            K++++ HP  R+GVFYCG P + KEL++LALDFS KT+TKFDFHKENF
Sbjct:  874 KKIAVQHPGKRIGVFYCGMPGMIKELKNLALDFSRKTTTKFDFHKENF 921          
BLAST of FC929363 vs. ExPASy Swiss-Prot
Match: RBOHB_ARATH (Respiratory burst oxidase homolog protein B OS=Arabidopsis thaliana GN=RBOHB PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 KRVSLNHPDSRVGVFYCGAPALTKELRHLALDFSHKTSTKFDFHKENF 144
            K V++NH + RVGVFYCG   +  EL+ LA DFS KT+TKF+FHKENF
Sbjct:  796 KHVAVNHVNQRVGVFYCGNTCIIGELKRLAQDFSRKTTTKFEFHKENF 843          
The following BLAST results are available for this feature:
BLAST of FC929363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RBOHC_ARATH2.788e-1879.17Respiratory burst oxidase homolog protein C OS=Ara... [more]
RBOHD_SOLTU6.211e-1885.42Respiratory burst oxidase homolog protein D OS=Sol... [more]
RBOHC_SOLTU6.211e-1881.25Respiratory burst oxidase homolog protein C OS=Sol... [more]
RBOHA_ARATH6.868e-1779.17Respiratory burst oxidase homolog protein A OS=Ara... [more]
RBOHB_SOLTU9.917e-1672.92Respiratory burst oxidase homolog protein B OS=Sol... [more]
RBOHG_ARATH1.692e-1570.83Putative respiratory burst oxidase homolog protein... [more]
RBOHD_ARATH1.432e-1466.67Respiratory burst oxidase homolog protein D OS=Ara... [more]
RBOHB_ARATH2.528e-1162.50Respiratory burst oxidase homolog protein B OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2BB11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929363 ID=FC929363; Name=FC929363; organism=Citrus clementina; type=EST; length=506bp
AAACGCGTTTCTCTCAATCACCCTGATTCTAGAGTTGGTGTTTTCTATTG
CGGGGCACCGGCACTGACAAAAGAGCTACGACACCTAGCTTTGGATTTCT
CTCACAAGACAAGCACCAAGTTTGATTTCCATAAAGAAAACTTCTAGATC
AAGTCCCTCCTGATTTCCACCATTATATATCATCTCTTCCACTCCGTTTT
CTCGTACAAAGCCTGTGGCATGGCCCACTGGCCCTTATGTTTATAGAAAA
ATCATATCAATATTTGTTTGGTACCCAGTTGATTTTGCTGCAAAATCACT
AATAGAGAGCATTAGAAATATCAAGCGGACAAAGGTTGGTGGGTAGTTGA
TATCAAGGCCACACCACACTGGACACACAACACATGGCAAGGGAGATATA
GGCCGAAAAAGGGGTTTAGCAAAAAAGTCATGCTCAGCCATTTCCTTTTG
TTAAAAGTTGTGGTCCAAGCCAATAATTTTGTGAGAAATAGTAATAATGG
CATCCT
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