FC929417
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929417 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 4.331e-17 Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 3 Query: 9 ADFILIPNRFEPWGLIQLHAMRYGTVPIVAS 101 ADF+L+P+RFEP GLIQLHAMRYGTVPIVAS Sbjct: 474 ADFMLVPSRFEPCGLIQLHAMRYGTVPIVAS 504 HSP 2 Score: 49.2914 bits (116), Expect = 4.331e-17 Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 1 Query: 103 SGGLVDTVEKGFTGFQMGSFIVDCEAVDPVHVAAV 207 +GGLVDTV++G+TGFQMG+ V+C+ +D VAA+ Sbjct: 505 TGGLVDTVKEGYTGFQMGALHVECDKIDSADVAAI 539
BLAST of FC929417 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 5.630e-17 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 3 Query: 9 ADFILIPNRFEPWGLIQLHAMRYGTVPIVAS 101 ADF+L+P+RFEP GLIQLHAMRYGTVPI AS Sbjct: 473 ADFMLVPSRFEPCGLIQLHAMRYGTVPICAS 503 HSP 2 Score: 50.8322 bits (120), Expect = 5.630e-17 Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1 Query: 103 SGGLVDTVEKGFTGFQMGSFIVDCEAVDPVHVAAVST 213 +GGLVDTV++G+TGF MG+F V+C+ VDP V + T Sbjct: 504 TGGLVDTVKEGYTGFHMGAFNVECDVVDPADVLKIVT 540
BLAST of FC929417 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 5.630e-17 Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 3 Query: 9 ADFILIPNRFEPWGLIQLHAMRYGTVPIVAS 101 ADF+L+P+RFEP GLIQLHAMRYGT+PI AS Sbjct: 474 ADFMLVPSRFEPCGLIQLHAMRYGTIPICAS 504 HSP 2 Score: 51.2174 bits (121), Expect = 5.630e-17 Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 Query: 103 SGGLVDTVEKGFTGFQMGSFIVDCEAVDPVHVAAVST 213 +GGLVDTV +GFTGF MG+F V+C VDP V ++T Sbjct: 505 TGGLVDTVTEGFTGFHMGAFNVECATVDPADVQKIAT 541
BLAST of FC929417 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 2.089e-16 Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 3 Query: 9 ADFILIPNRFEPWGLIQLHAMRYGTVPIVAS 101 ADFI++P+RFEP GLIQLHAMRYGTVPIVAS Sbjct: 476 ADFIIVPSRFEPCGLIQLHAMRYGTVPIVAS 506 HSP 2 Score: 46.595 bits (109), Expect = 2.089e-16 Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 1 Query: 103 SGGLVDTVEKGFTGFQMGSFIVDCEAVDPVHVAAVS 210 +GGLVDTV+ G+TGF +G F V CE VDP V A + Sbjct: 507 TGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATA 542
BLAST of FC929417 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2) HSP 1 Score: 53.1434 bits (126), Expect = 5.961e-16 Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 Query: 103 SGGLVDTVEKGFTGFQMGSFIVDCEAVDPVHVAAVST 213 +GGLVDTV++G+TGF MG+F VDCE VDP V V T Sbjct: 505 TGGLVDTVKEGYTGFHMGAFNVDCETVDPEDVLKVIT 541 HSP 2 Score: 51.9878 bits (123), Expect = 5.961e-16 Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 9 ADFILIPNRFEPWGLIQLHAMRYGTVPIVAS 101 ADF+LIP+RFEP GLIQLHAMRYGT I AS Sbjct: 474 ADFMLIPSRFEPCGLIQLHAMRYGTPCICAS 504
BLAST of FC929417 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 3.943e-14 Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 Query: 103 SGGLVDTVEKGFTGFQMGSFIVDCEAVDPVHVAAVST 213 +GGLVDTV +G TGF MGSF V+ E VDP VAAV + Sbjct: 462 TGGLVDTVREGVTGFHMGSFNVEFETVDPTDVAAVGS 498 HSP 2 Score: 48.521 bits (114), Expect = 3.943e-14 Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 3 Query: 9 ADFILIPNRFEPWGLIQLHAMRYGTVPIVAS 101 ADFI+IP+RFEP GLIQL M YG VPI +S Sbjct: 431 ADFIIIPSRFEPCGLIQLQGMSYGVVPICSS 461 The following BLAST results are available for this feature:
BLAST of FC929417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC929417 ID=FC929417; Name=FC929417; organism=Citrus clementina; type=EST; length=213bpback to top |