FC929507

Overview
NameFC929507
Unique NameFC929507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15009 contig Ccv1_Contig15009:1..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.398e-50
Identity = 98/208 (47.12%), Postives = 136/208 (65.38%), Query Frame = -1
Query:  175 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSI 798
            M SAV+T+CGQAYGA +Y  +GI  QR+ VL     + +T LY +S PIL  +G+S  IA    +F  G+IPQI+A+AL  P+Q+FLQAQ+IV P AY+S    ++H LL+W+                  SWW++V    +YI+ S  CK TW GF+ +AF G+  +FKL+ ASAVMLCLE WY Q LV+++GLL NP ++LD++SI
Sbjct:  109 MASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISI 316          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe GN=SPAC11D3.06 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.819e-19
Identity = 61/206 (29.61%), Postives = 106/206 (51.46%), Query Frame = -1
Query:  181 SAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWI--VVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 792
            +A +TL    +GA K + LGI LQ   ++L++  + + +++ +S+PILIFL ++P++A ++  F+  LIP    Y     ++KFLQ Q I    +YI   T  +++ L+++ V+               S+W+  +++ Q+   VK       W G+  +       F KLS    VM+  E W F+I+ L+AG L    LA  S+
Sbjct:   67 TAFDTLGSNLWGAGKKQELGILLQTGFIVLSILYLPICLVWWYSKPILIFLHQTPELAEASQKFLRYLIPGGLGYVCFELLKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHYYGLGLKGAPLATGLSYWLSFILLTQYAKYVKG---AEAWNGWNKRCLENFGPFVKLSLLGIVMVGTEWWAFEIVALVAGKLGAVPLAAQSV 269          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.819e-19
Identity = 57/207 (27.54%), Postives = 106/207 (51.21%), Query Frame = -1
Query:  178 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLS 798
            + SA +TL  Q YG+   + +G+ LQR +++L L  +    L++ ++ IL+   + P ++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ VY+              + + + +  F+YI++S   + TW G++++      SFF+L+  S +MLC+E W ++I   L+G+L   EL   S++
Sbjct:   91 LSSACDTLISQTYGSRNLKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQTYVTIFIPALPATFLYTLQVKYLLNQGIVLPQVVTGVAANLVNALANYLFVYQLHLGVMGSALANTVAQFTLALLLFLYILRSKVYQATWGGWSLECLQDWASFFRLAIPSMLMLCMEWWAYEIGSFLSGILGMVELGAQSVT 297          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.026e-19
Identity = 56/206 (27.18%), Postives = 101/206 (49.03%), Query Frame = -1
Query:  181 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 798
            +  A +TL  Q +G +  +++GI LQR  ++L L       L + +  IL+   + P+++    ++V   +P + A  L   + K+LQ Q I+ P         + + L +++ +Y               S +I +I  F+YIV       TW G++   F    +F +L+ AS +MLC+E W F+I + LAG+L   +LA  ++
Sbjct:  106 LAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVLGMVDLAAQAI 311          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.011e-18
Identity = 56/206 (27.18%), Postives = 103/206 (50.00%), Query Frame = -1
Query:  181 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 798
            + SA +TL  Q YG+   + +G+ LQRSA++L L       L++ ++ IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ +++              S + + +  F+YI+     + TW G++++      SF +L+  S +MLC+E W +++   L+G+L   EL   S+
Sbjct:   92 LSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSI 297          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.430e-18
Identity = 58/207 (28.02%), Postives = 108/207 (52.17%), Query Frame = -1
Query:  181 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQ-KFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 798
            + SA +TL  Q +G+N  + +G+ LQR  ++L L       L + + PIL+ + +SP++AS + ++V   +P + A A  + +Q ++LQ Q I+ P      A  +++ L+++V ++               S + + +  +VYI   +  K TW G++        +F +L+  S +MLC+E W ++I   LAGL+   EL   S+
Sbjct:  110 LASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPA-AFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDGWSRDCLQEWGAFIRLALPSMLMLCVEWWTYEIGGFLAGLISETELGAQSV 315          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.479e-18
Identity = 56/206 (27.18%), Postives = 101/206 (49.03%), Query Frame = -1
Query:  181 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 798
            + SA +TL  Q YG+   + +G+ LQRSA++L L       L++ ++ IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ +++              S + + +  F YI+     + TW G++++      SF  L+  S +MLC+E W +++   L+G+L   EL   S+
Sbjct:   92 LSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGSALANLISQYTLALLLFFYILGKKLHQATWGGWSLECLQDWASFLHLAVPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSI 297          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.850e-18
Identity = 59/207 (28.50%), Postives = 104/207 (50.24%), Query Frame = -1
Query:  181 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQ-KFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 798
            + SA +TL  Q++G    + +G+ LQR  ++L L       +++ +  +L+ L + PD+A  A V+V   IP + A A  F +Q ++LQ+Q I+ P   +  A  VV++ ++   +Y               S + +    F+Y+       HTW G+T + F    S+ +L+  S  M+C+E W F+I   LAGL+   EL   ++
Sbjct:  101 LASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPA-AFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELGAQAV 306          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.303e-17
Identity = 57/207 (27.54%), Postives = 99/207 (47.83%), Query Frame = -1
Query:  178 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLS 798
            + SA +TL  Q YG+   + +G+ LQR  ++L L       L++ +  IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L ++V +Y               S + + I  F+YI+     + TW G++ +      SF +L+  S +MLC+E W +++   L+G+L   EL   S++
Sbjct:   92 LSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSIT 298          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 55/207 (26.57%), Postives = 99/207 (47.83%), Query Frame = -1
Query:  178 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLS 798
            + SA +TL  Q YG+   + +G+ LQR  ++L L       L++ +  IL+   + PD++     +V   IP + A  L     K+L  Q IV P      A  +V+ L +++ +++              S + + I  F+YI+       TW G++ +      SF +L+  S +MLC+E W +++   L+G+L   EL   S++
Sbjct:   91 LSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGILGMVELGAQSIT 297          
The following BLAST results are available for this feature:
BLAST of FC929507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TT12_ARATH3.398e-5047.12Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YAO6_SCHPO1.819e-1929.61Uncharacterized transporter C11D3.06 OS=Schizosacc... [more]
S47A1_RABIT1.819e-1927.54Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A1_XENTR9.026e-1927.18Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_HUMAN2.011e-1827.18Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_DANRE3.430e-1828.02Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A1_PONAB4.479e-1827.18Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A2_MOUSE5.850e-1828.50Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_MOUSE1.303e-1727.54Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_RAT6.468e-1726.57Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CH10RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929507 ID=FC929507; Name=FC929507; organism=Citrus clementina; type=EST; length=858bp
GGAAAATTACCCATTTGAACAATCAAATGTAGCAAATGATGGCTTTGGCA
ACCAAATGAAATCATGAGTGATTTGTGAAACTAATTTACTGAAAGTTAAG
GGGGGAGAGCTTAGATGCAATTATCAGAAAAGGGCGTGACCAAAAAGGGA
AGGAAAATAGTTTTCTGCTTACCAAATGGAAAGAGAGTCCAAAGCCAACT
CCGGATTTGGTAACAAACCAGCCAATAGAACAAGAATCTGAAAGTACCAC
GTCTCCAAGCACAGCATCACAGCGGAGGCAGCCGATAGTTTGAAGAAGGA
AGGGAGACCAGAGAAGGCCTGAACAGTAAACCCACGCCACGTGTGCTTAC
ACCTATCACTTTTAACAATATAAACAAACTGAGCAATCACAACAATCCAC
CAGGATAAGCTCAAGATCAGTGAGGCGCCAATCAAGCCAAGCCCGATTTC
GTAGACTGCAACCCAACTTAGCAGCAGATGCACCACTAACGTGGCCGTTG
AAATGTATGCACTTGGAGCCACTATGCTTTGTGCTTGCAAAAATTTTTGG
ATTGGGAAGTTCAAGGCGTATGCAAAGATTTGGGGTATCAGGCCGTAGAC
AAAAACTGCCGCTGATGAGGCAATATCTGGCGACTCCCCTAGAAAAATCA
AAATTGGTCTCGAAAAGACGTATAGAACTGTCATTAAAATCCCCGTGAGC
GTCAGCAGAACCGCTGATCTTTGCAAATATATCCCTAGCATTTCATATTT
GTTTGCACCGTATGCTTGCCCACATAATGTCTCCACGGCACTTCCCATTA
CCCACTGTTAACAAAAGAATTTAATTATAAGAATATTAAAGTACCCTGTG
TGCGTGTG
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