FC929655

Overview
NameFC929655
Unique NameFC929655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929655 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 3 
Query:    6 YRVIAAYTLMSTRYRILTHHYSKIS*LAHKCVMASSGFHADVKALQKLLASRDLIYQ 176
            Y VIAA T MST Y ILT  YSKI  LA KCVMASSGF ADV+ALQK+LASR LIYQ
Sbjct:   26 YCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQ 82
[Close]
BLAST of FC929655 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:    6 YRVIAAYTLMSTRYRILTHHYSKIS*LAHKCVMASSGFHADVKALQKLLASRDLIYQ 176
            Y VIAA T MST Y IL+  YSKI  LA + V++SSGF ADVKALQK+L SR LIYQ
Sbjct:   26 YCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQ 82
The following BLAST results are available for this feature:
BLAST of FC929655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSB1_PETHY1.889e-1475.44Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH1.146e-1166.67Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2DF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929655 ID=FC929655; Name=FC929655; organism=Citrus clementina; type=EST; length=178bp
CTCATTATCGTGTAATCGCTGCCTACACTCTAATGTCGACCCGTTACCGT
ATCCTCACTCACCATTACTCCAAAATCAGTTAACTGGCGCACAAATGTGT
TATGGCCTCTTCTGGTTTTCATGCTGATGTGAAAGCCTTACAAAAACTCT
TGGCATCCAGGGACTTGATCTATCAGCA
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