FC929733

Overview
NameFC929733
Unique NameFC929733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length876
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:19..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 300.442 bits (768), Expect = 8.537e-81
Identity = 138/243 (56.79%), Postives = 170/243 (69.96%), Query Frame = 3
Query:  159 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQ 875
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC    +YYGRGP+QL+WNYNY  C                 A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCY+Q+
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLV--ANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQR 324          
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.456e-80
Identity = 139/239 (58.16%), Postives = 172/239 (71.97%), Query Frame = 3
Query:  171 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQ 875
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC  +  YPC  GK YYGRGP+QL+WNYNY  C                 ATD VLSFK+A+WFWMT Q PKPSCH+V+T  W+PSA D  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G NLDCY+Q+
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLV--ATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQR 240          
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 7.227e-80
Identity = 137/243 (56.38%), Postives = 169/243 (69.55%), Query Frame = 3
Query:  159 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQ 875
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC     YYGRGP+QL+WNYNY +C                 + DPV++FK+AIWFWMT Q PKPSCH VI  +W+PS  D  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+ PG NLDCY+Q+
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQC--GRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQR 309          
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 7.227e-80
Identity = 145/257 (56.42%), Postives = 176/257 (68.48%), Query Frame = 3
Query:  123 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGG--WRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQ 875
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  R RE+AAF AQT HETTGG  W  AP G Y WGYC+  E++P + YC    NYPC  GK Y+GRGP+QLTWNYNY +C                 ATDP +SFKSA WFWMT Q PKPSCH+VI   W PS +D  AGR+PG+GL TNIINGG+ECGQGWN  V +RIGF+  +C   G+  G NLDCY+Q+
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNP-ADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLL--ATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQR 310          
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.684e-79
Identity = 144/260 (55.38%), Postives = 174/260 (66.92%), Query Frame = 3
Query:  105 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQ 872
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNP-STYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLV--ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQ 312          
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 6.118e-79
Identity = 149/255 (58.43%), Postives = 170/255 (66.67%), Query Frame = 3
Query:  126 GERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPC-RGKYY-GRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGW-NDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQ 875
            G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HETTGGW DAP G YAWGYC++ EI+   PYC  + NY C  GK Y GRGPIQL+WNYNY  C                  TDPV+SFK+AIWFWM  Q PKPSCH VIT  W PSA D+ AGR+PGYG+ TNIINGGIECGQG  N A  +RIGF+  +C   G   G NLDCY Q+
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC--GDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQR 327          
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.044e-78
Identity = 142/251 (56.57%), Postives = 173/251 (68.92%), Query Frame = 3
Query:  138 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGG--WRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQ 872
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF AQT HETTGG  W  AP G YAWGYC+  E++PPS YC  + NYPC  GK Y+GRGP+QL+WNYNY +C                 ++DP +SFKSA WFWMT Q PKPSCH VI   W PS++D  AGR+PGYG+ TNIINGG+ECG+GWN  V +RIGF+  +C   G+  G NLDCY+Q
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLL--SSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQ 312          
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.363e-78
Identity = 145/265 (54.72%), Postives = 175/265 (66.04%), Query Frame = 3
Query:  105 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQ 872
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W PS+ DV A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G NLDCY Q
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNP-SAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLV--ATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQ 311          
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.154e-77
Identity = 139/260 (53.46%), Postives = 172/260 (66.15%), Query Frame = 3
Query:  108 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQ 875
            G G   G    G G  GG +  ++S+E+FE LL +RND  CPARGFYTYDA + AA AFP F  +G++  R RE+AAF  QT HETTGGW  AP G Y+WGYCF  EI   + YC  +  +PC    KY+GRGPIQL++NYNY                    A+DPV+SFK+A+WFWMT Q PKPSCH+VIT +W PS+ D+ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY Q+
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQR 324          
BLAST of FC929733 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 1.154e-77
Identity = 136/244 (55.74%), Postives = 169/244 (69.26%), Query Frame = 3
Query:  156 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQ 875
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PSA D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PG NLDC +Q+
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQR 318          
The following BLAST results are available for this feature:
BLAST of FC929733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_ARATH8.537e-8156.79Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_CARPA1.456e-8058.16Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_BRANA7.227e-8056.38Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_THECC7.227e-8056.42Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_PHAVU4.684e-7955.38Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI6_POPTR6.118e-7958.43Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_GOSHI1.044e-7856.57Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI5_PHAVU1.363e-7854.72Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI9_ORYSJ1.154e-7753.46Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_TOBAC1.154e-7755.74Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BE01RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929733 ID=FC929733; Name=FC929733; organism=Citrus clementina; type=EST; length=876bp
GGATAATTGATATCATAACTGTTGCTTTCAAAATGAGGCTTATTGCGTCC
TTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCACG
GAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGA
CGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGAC
TTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACAC
TTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACT
CTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACT
GTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATT
CAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCT
AGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTAC
TATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAG
CCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGA
CGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCA
ACGGTGGAATTGAATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCGT
ATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTA
CAATCTTGATTGCTACCACCAACAGC
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