FC929755

Overview
NameFC929755
Unique NameFC929755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9263 contig Ccv1_Contig9263:302..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.904e-54
Identity = 106/122 (86.89%), Postives = 116/122 (95.08%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSS 366
            AQIW+TA QE+Y AIT+AYYRGA GALL+YDVTKPTTFENVSRWLKELRDHADS IVIM+IGNKTDLKHLRAVATEDA SYAE+EGLSF+E SALEA+NVEKAFQTILSE+YRIISKKS+SS
Sbjct:   63 AQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISS 184          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.493e-46
Identity = 91/124 (73.39%), Postives = 109/124 (87.90%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSWE 372
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  TF+NV RWL+ELRDHADS IVIMM GNK+DLKHLRAV+ ED  + AE+EGLSF+E SALEA+N+EKAFQTIL+EIY IISKK+L++ E
Sbjct:   63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQE 186          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 181.8 bits (460), Expect = 9.472e-46
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSWEPA 378
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  TF+NV RWL+ELRDHADS IVIMM GNK+DL HLR+VA ED  S AE+EGLSF+E SALEA NVEKAFQTIL EIY IISKK+L++ E A
Sbjct:   63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAA 188          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.599e-45
Identity = 90/122 (73.77%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSS 366
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  TFENV RWLKELRDHADS IVIM++GNK+DLKHLR V TE A ++ EREGLSF+E SALE+ NVEKAFQ IL+EIY I+SKK L S
Sbjct:   63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDS 184          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.047e-44
Identity = 87/124 (70.16%), Postives = 107/124 (86.29%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLSSWE 372
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+TK  TF+NV RWL+ELRDHADS IVIMM GNK+DL HLRAV+ +D  + +E+EGLSF+E SALEA N+EKAFQTIL+EIY I+SKK+L++ E
Sbjct:   63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQE 186          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 6.788e-44
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+ GLSF+E SAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 6.788e-44
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+ GLSF+E SAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 6.788e-44
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+ GLSF+E SAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 6.788e-44
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+ GLSF+E SAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of FC929755 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 6.788e-44
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query:    1 AQIWNTA*QEQY*AITNAYYRGARGALLLYDVTKPTTFENVSRWLKELRDHADSYIVIMMIGNKTDLKHLRAVATEDALSYAEREGLSFVEASALEAINVEKAFQTILSEIYRIISKKSLS 363
            AQIW+TA QE+Y AIT+AYYRGA GALL+YD+ K  T+ENV RWLKELRDHADS IVIM++GNK+DL+HLRAV T++A ++AE+ GLSF+E SAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:   62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
The following BLAST results are available for this feature:
BLAST of FC929755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
RAA2A_ARATH1.904e-5486.89Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU2.493e-4673.39Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAA2C_ARATH9.472e-4673.81Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE3.599e-4573.77Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11C_LOTJA3.047e-4470.16Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_RAT6.788e-4469.42Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT6.788e-4469.42Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB6.788e-4469.42Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG6.788e-4469.42Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE6.788e-4469.42Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1BF03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929755 ID=FC929755; Name=FC929755; organism=Citrus clementina; type=EST; length=380bp
GCTCAGATATGGAACACTGCATGACAGGAGCAATACTGAGCAATAACCAA
TGCCTATTATAGAGGTGCACGCGGAGCTCTTTTACTTTATGACGTGACGA
AGCCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGAC
CACGCAGACTCCTACATTGTGATCATGATGATTGGCAATAAGACTGATCT
GAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCTAAGCTATGCTGAGA
GAGAAGGGCTTTCCTTCGTTGAAGCCTCAGCTCTTGAAGCAATAAATGTC
GAGAAGGCTTTCCAGACTATTCTCTCAGAGATATACCGGATAATCAGCAA
GAAGTCCCTCTCTTCATGGGAGCCAGCTCC
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