FC929856

Overview
NameFC929856
Unique NameFC929856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:9..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.146e-78
Identity = 142/218 (65.14%), Postives = 156/218 (71.56%), Query Frame = 3
Query:   39 MGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQ-SXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            MGSL+ ER T GWAA+DPSG+LSPYTYTLR TG EDV+IK++YCGICHTDIHQIKNDLG SNYPM                 + F             CC+ CRPC+ADVEQYCNKKIWSYNDVYTDGKPTQGGF+  MVVDQKFVVKIPDGMA EQAAPLLCAGVTV+SPL+HFGLK+ S                   AKAMGHH TVISSSDKK+
Sbjct:    1 MGSLEAERKTTGWAARDPSGVLSPYTYTLRETGPEDVFIKIIYCGICHTDIHQIKNDLGASNYPMVPGHEVVGEVVEVGSDVTKFKVGDCVGDGTIVGCCKTCRPCKADVEQYCNKKIWSYNDVYTDGKPTQGGFSGHMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLKEISGLRGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKK 218          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.815e-77
Identity = 139/216 (64.35%), Postives = 154/216 (71.30%), Query Frame = 3
Query:   39 MGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            MGSL+ ER T+GWAA+DPSG+LSPY YTLRNTG +DVY++V+ CGICHTD+HQIKNDLGMSNYPM                 + F              C NCRPC +D+EQYCNKKIWSYNDVY DGKPTQGGFA +MVVDQKFVVKIPDGMA EQAAPLLCAGVTV+SPL+HFGLKQS                   AKAMGHH TVISSSDKK
Sbjct:    1 MGSLEVERKTVGWAARDPSGVLSPYEYTLRNTGPQDVYVEVMCCGICHTDVHQIKNDLGMSNYPMVPGHEVVGEVVEVGSEVTKFRAGDVVGVGCIVGSCGNCRPCNSDIEQYCNKKIWSYNDVYPDGKPTQGGFAGAMVVDQKFVVKIPDGMAPEQAAPLLCAGVTVYSPLNHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKK 216          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.006e-76
Identity = 136/216 (62.96%), Postives = 154/216 (71.30%), Query Frame = 3
Query:   39 MGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            MG L+ E+ TIGWAA+DPSG+LSPYTYTLRNTG EDV +KVLYCG+CHTD+HQ+KNDLGMSNYP+                 S F              CRNC PC+ D+EQYCNKKIW+ NDVYTDGKPTQGGFA+SMVVDQKFVVKIP+GMA EQAAPLLCAG+TV+SPL+HFG KQS                   AKAMGHH TVISSS+KK
Sbjct:    1 MGGLEVEKTTIGWAARDPSGVLSPYTYTLRNTGPEDVEVKVLYCGLCHTDLHQVKNDLGMSNYPLVPGHEVVGEVVEVGPDVSKFKVGDTVGVGLLVGSCRNCGPCKRDIEQYCNKKIWNCNDVYTDGKPTQGGFAKSMVVDQKFVVKIPEGMAPEQAAPLLCAGITVYSPLNHFGFKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKK 216          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.101e-74
Identity = 134/218 (61.47%), Postives = 158/218 (72.48%), Query Frame = 3
Query:   39 MGSLDT-ERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            MGS++  E+  +GWAA+DPSG+LSPY+YTLR+TGA+DVYIKV+ CGICHTDIHQIKNDLGMSNYPM                 S F             CC +C+PC +++EQYCNK+IWSYNDVYTDGKPTQGGFA++M+V+QKFVVKIP+GMA+EQAAPLLCAGVTV+SPLSHFGL  S                   AKAMGHH TVISSSDKK+
Sbjct:    1 MGSVEAGEKKALGWAARDPSGVLSPYSYTLRSTGADDVYIKVICCGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVLEVGSDVSKFTVGDVVGVGVVVGCCGSCKPCSSELEQYCNKRIWSYNDVYTDGKPTQGGFADTMIVNQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLMASGLKGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKK 218          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.203e-74
Identity = 132/216 (61.11%), Postives = 151/216 (69.91%), Query Frame = 3
Query:   39 MGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            MGSLD E++ IGWAA+DPSG+LSPYTYTLRNTG EDV +KVLYCG+CH+D+HQ+KNDLGMSNYP+                 S F              CRNC PC+ ++EQYCNKKIW+ NDVYTDGKPTQGGFA SMVVDQ FVVKIP+GMA EQAAPLLCAG+TV+SP +HFG  QS                   AKAMGHH TVISSS+KK
Sbjct:    1 MGSLDVEKSAIGWAARDPSGLLSPYTYTLRNTGPEDVQVKVLYCGLCHSDLHQVKNDLGMSNYPLVPGHEVVGKVVEVGADVSKFKVGDTVGVGLLVGSCRNCGPCKREIEQYCNKKIWNCNDVYTDGKPTQGGFANSMVVDQNFVVKIPEGMAPEQAAPLLCAGITVYSPFNHFGFNQSGFRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKK 216          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.217e-73
Identity = 133/216 (61.57%), Postives = 153/216 (70.83%), Query Frame = 3
Query:   39 MGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            MGSL+TER  +GWAA D +G L+PYTY+LR+TG EDV+IKV+ CG+CHTDIHQIKNDLGMS+YPM                 + F              C+NC PC++++EQYCNKKIWSYNDVYTDGKPTQGGFAESMVV QKFVV+IPDGM+ EQAAPLLCAG+TV+SPL HFGLKQS                   AKAMGHH TVISSSDKK
Sbjct:    1 MGSLETERKIVGWAATDSTGHLAPYTYSLRDTGPEDVFIKVISCGVCHTDIHQIKNDLGMSHYPMVPGHEVVGEVVEVGSDVTRFKVGDVVGVGVIVGSCKNCHPCKSEIEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVHQKFVVRIPDGMSPEQAAPLLCAGLTVYSPLKHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKK 216          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.890e-73
Identity = 132/216 (61.11%), Postives = 150/216 (69.44%), Query Frame = 3
Query:   39 MGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            MGSL+ ER T GWAA+DPSG+LSPYTY+LRNTG ED+YIKVL CGICH+DIHQIKNDLGMS+YPM                 + +             CCR+C PC +D EQYCNKKIW+YNDVYTDGKPTQGGFA  +VV ++FVVKIPDG+  EQAAPL+CAGVTV+SPL  FGLKQS                   AKAMGHH TVISSSDKK
Sbjct:    1 MGSLEKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKK 216          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.030e-72
Identity = 131/216 (60.65%), Postives = 150/216 (69.44%), Query Frame = 3
Query:   39 MGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            MGSL+ ER T GWAA+DPSG+LSPYTY+LRNTG ED+YIKVL CG+CH+DIHQIKNDLGMS+YPM                 + +             CCR+C PC +D EQYCNKKIW+YNDVYTDGKPTQGGFA  +VV ++FVVKIPDG+  EQAAPL+CAGVTV+SPL  FGLKQS                   AKAMGHH TVISSSDKK
Sbjct:    1 MGSLEKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGVCHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKK 216          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.758e-72
Identity = 132/218 (60.55%), Postives = 154/218 (70.64%), Query Frame = 3
Query:   39 MGSLDT-ERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            MGS++  ER T+G AAKDPSGIL+PYTYTLRNTG +DVYIK+ YCG+CH+D+HQIKNDLGMSNYPM                 + F             CC++CR C++++EQYCNKKIWSYNDVYTDGK TQGGFAES VV+QKFVVKIP+G+A EQ APLLCAGVTV+SPLSHFGLK                     AKA+GHH TVISSSDKK+
Sbjct:    1 MGSIEAAERTTVGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKK 218          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.998e-72
Identity = 131/216 (60.65%), Postives = 149/216 (68.98%), Query Frame = 3
Query:   39 MGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            MGSL+ ER T GWAA+DPSG+LSPYTY+LRNTG ED+YIKVL CGICH+DIHQIKNDLGMS+YPM                 + +             CCR+C PC +D EQYCNKKIW+YNDVYTDGKPTQGGFA  +VV ++FVVKIPDG+  EQAAPL+CAGVTV+ PL  FGLKQS                   AKAMGHH TVISSSDKK
Sbjct:    1 MGSLEKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYRPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKK 216          
The following BLAST results are available for this feature:
BLAST of FC929856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CADH1_ARACO8.146e-7865.14Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH1_OCIBA1.815e-7764.35Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH1_TOBAC2.006e-7662.96Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH4_ARATH1.101e-7461.47Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
CADH2_TOBAC3.203e-7461.11Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH_POPDE1.217e-7361.57Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
CADH_EUCGL7.890e-7361.11Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH2_EUCGU1.030e-7260.65Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH_MEDSA1.758e-7260.55Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH1_EUCGU2.998e-7260.65Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]

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Properties
Property NameValue
Genbank descriptionC34001B08EF PostHarvC1 Citrus clementina cDNA clone C34001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929856 ID=FC929856; Name=FC929856; organism=Citrus clementina; type=EST; length=707bp
CACATAACTCAGACGCTAAAACGAAAAAGTCACAAAAAATGGGAAGCCTT
GATACCGAGAGAGCAACGATAGGGTGGGCTGCAAAGGATCCATCTGGGAT
TCTGTCACCTTACACTTACACTCTCAGAAACACAGGAGCAGAAGATGTTT
ACATTAAGGTTCTTTACTGTGGAATCTGCCACACTGATATTCATCAAATA
AAAAATGATCTGGGCATGTCTAACTATCCAATGGTTCCAGGACATGAGGT
GGTGGGTGAAGTGAAGGAAGTGGGTTCAGAAGTGAGCAACTTTAAAGTAG
GAGACAAGGTTGGTGTTGGGGTTCTCGTTGGTTGTTGCAGAAACTGCAGG
CCGTGCGAGGCAGATGTTGAGCAGTACTGCAACAAGAAAATCTGGTCCTA
TAACGATGTTTACACCGATGGCAAGCCTACACAAGGCGGCTTTGCTGAGT
CCATGGTCGTTGATCAAAAGTTTGTGGTGAAAATACCAGATGGAATGGCA
CTGGAGCAGGCGGCACCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCC
CCTGAGCCACTTTGGATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGG
GGCTCGGAGGAGTAGGCCACATGGGGGTTTTGATAGCTAAGGCGATGGGA
CACCATGNTACTGTGATTAGCTCTTCTGATAAGAAAGAGTGGAAGCTATG
GAGCATC
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