FC929867

Overview
NameFC929867
Unique NameFC929867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929867 vs. ExPASy Swiss-Prot
Match: ACLY_MOUSE (ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.160e-51
Identity = 99/213 (46.48%), Postives = 140/213 (65.73%), Query Frame = 3
Query:    3 TLDARAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESN*KQQECT 641
            T D +  L+   P + +  +  FI G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +     + L+IGG IANFT+VA TF GI+RA+R+ +   K+ E T
Sbjct:  162 TEDIKRHLLVHAPEDKKEVLASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVT 374          
BLAST of FC929867 vs. ExPASy Swiss-Prot
Match: ACLY_RAT (ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.822e-51
Identity = 101/213 (47.42%), Postives = 143/213 (67.14%), Query Frame = 3
Query:    9 DARAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESN*KQQECT 641
            D +  L+   P + +  +  FI G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+RA+R+ + + K+ E T
Sbjct:  164 DIKRHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGSLKEHEVT 374          
BLAST of FC929867 vs. ExPASy Swiss-Prot
Match: ACLY_HUMAN (ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 4.813e-51
Identity = 101/213 (47.42%), Postives = 142/213 (66.67%), Query Frame = 3
Query:    9 DARAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESN*KQQECT 641
            D +  L+   P + +  +  FI G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+RA+R+ +   K+ E T
Sbjct:  164 DIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVT 374          
BLAST of FC929867 vs. ExPASy Swiss-Prot
Match: ACLY_BOVIN (ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.813e-51
Identity = 101/213 (47.42%), Postives = 142/213 (66.67%), Query Frame = 3
Query:    9 DARAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESN*KQQECT 641
            D +  L+   P + +  +  FI G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+RA+R+ +   K+ E T
Sbjct:  164 DIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVT 374          
BLAST of FC929867 vs. ExPASy Swiss-Prot
Match: ACLY_SHEEP (ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.286e-51
Identity = 101/213 (47.42%), Postives = 142/213 (66.67%), Query Frame = 3
Query:    9 DARAPLIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWANIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATAD--PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESN*KQQECT 641
            D +  L+   P + +  +  FI G+F  ++DL F+++E+NP  +     Y LD+  ++D TA +    KW +IEFP PFGR     E++I  LD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E++   YA+ ++   T +  PDG  + L+IGG IANFT+VA TF GI+RA+R+ +   K+ E T
Sbjct:  164 DIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYILDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVT 374          
BLAST of FC929867 vs. ExPASy Swiss-Prot
Match: ACLY_CAEEL (Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.236e-48
Identity = 100/214 (46.73%), Postives = 138/214 (64.49%), Query Frame = 3
Query:   39 PLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLVNGEPYPLDMRGELDDTAAFKNFKKWAN----------IEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDC---ATADPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESN*KQQECT 641
            PL+    +  F++ ++  ++DL F+++E+NPF L+N + + LD+   LD+TA F    KW +          +EFP PFGR L+S E +I  +D KT ASLK T+LN KGR+WTMVAGGGASV++ DTV DLG ASEL NY EYSG P+E +  +YA+ ++      T  PDG  + L+IGG IANFT+VA TF GI+RA     S  K+ + T
Sbjct:  175 PLKDSDIVRRFVVELYKAYKDLHFTYLEINPFVLLNNQIHVLDLAARLDETANFLCADKWKSRLTPYGGPNHVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVVFTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTLLSVMTEGTPRPDG--KVLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVT 386          
BLAST of FC929867 vs. ExPASy Swiss-Prot
Match: ACL2_SCHPO (Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe GN=SPAC22A12.16 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.334e-42
Identity = 92/224 (41.07%), Postives = 129/224 (57.59%), Query Frame = 3
Query:   24 LIATLPLEFRGKIGDFIMGVFAVFQDLDFSFIEMNPFTLV----NGEPYPLDMRGELDDTAAFKNFKKWA--------------------------NIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCAT-ADPDGRKRALLIGGGIANFTDVATTFNGIIRAL 602
            L++ +P+E    + DFI+ +++V+ D  F+++E+NP  ++      + + LD+  +LD TA F+   KWA                           + FP PFGR LS  E+++  LD KT ASLK T+LN +GR+W +VAGGGASV+YAD V   G A EL NY EYSGAP + +  +YA+ V+D  T  +P    + L IGGGIANFT  A TF  I RAL
Sbjct:  199 LLSDIPVEQHESLVDFIIRLYSVYVDCQFTYLEINPLVVIPTAKGADVFYLDLAAKLDQTAEFECGAKWAVARAPESLGIKTSGEESGAINADHGPPMVFPAPFGRELSKEEAYVQGLDAKTGASLKLTILNAEGRVWNLVAGGGASVVYADAVAVNGAADELANYGEYSGAPTDGQTYEYAKTVLDLMTRGEPRADGKVLFIGGGIANFTSPAVTFRAIARAL 422          
The following BLAST results are available for this feature:
BLAST of FC929867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ACLY_MOUSE2.160e-5146.48ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 ... [more]
ACLY_RAT2.822e-5147.42ATP-citrate synthase OS=Rattus norvegicus GN=Acly ... [more]
ACLY_HUMAN4.813e-5147.42ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 ... [more]
ACLY_BOVIN4.813e-5147.42ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV... [more]
ACLY_SHEEP6.286e-5147.42ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV... [more]
ACLY_CAEEL2.236e-4846.73Probable ATP-citrate synthase OS=Caenorhabditis el... [more]
ACL2_SCHPO5.334e-4241.07Probable ATP-citrate synthase subunit 2 OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionC34001C09EF PostHarvC1 Citrus clementina cDNA clone C34001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929867 ID=FC929867; Name=FC929867; organism=Citrus clementina; type=EST; length=697bp
TGACACTGGATGCTCGTGCTCCTTTGATAGCCACACTTCCTTTGGAGTTT
CGTGGAAAAATTGGTGACTTCATCATGGGGGTCTTTGCCGTATTTCAAGA
TCTCGACTTCAGTTTCATAGAGATGAATCCCTTTACACTGGTTAATGGGG
AGCCATACCCGCTGGATATGAGGGGAGAGCTGGATGACACTGCTGCCTTT
AAGAACTTTAAAAAGTGGGCCAACATCGAGTTTCCTTTGCCTTTTGGAAG
AGTCTTGAGTTCTACCGAAAGCTTCATTCACTCATTGGATGAAAAGACAA
GTGCATCTTTGAAATTTACTGTATTGAACCCCAAAGGGCGTATATGGACA
ATGGTAGCTGGAGGTGGTGCTAGTGTAATATATGCTGATACTGTTGGAGA
CTTGGGTTATGCATCGGAGCTTGGTAACTATGCAGAGTACAGTGGAGCTC
CCAACGAGGAGGAGGTGTTGCAGTATGCAAGGGTTGTTATTGATTGTGCC
ACTGCAGATCCTGATGGTCGTAAGAGAGCCCTTCTCATTGGAGGGGGTAT
TGCAAATTTTACTGATGTTGCTACAACATTCAATGGGATTATTCGAGCTT
TGAGGGAGAAGGAATCCAACTAAAAGCAGCAAGAATGCACATATTTGTTC
GAAGAGTGGTCCCGACTATCAGACTGGTCTTGCAAGATGCGTGCTCT
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