FC929870

Overview
NameFC929870
Unique NameFC929870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929870_ssr20 microsatellite FC929870_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
FC929870_ssr208 microsatellite FC929870_ssr208:208..222. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15057 contig Ccv1_Contig15057:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929870 vs. ExPASy Swiss-Prot
Match: B3GT2_ARATH (Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.636e-29
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 1
Query:  388 MSLKSKGELTSRSVVSQKWTFLLCLGCFCAGMLFTNRMWAVPESKGFTRTTAMEAEKLKLVSEGCNPRLLQQKVVRHDSKDIFGEV 645
            MS K KGE +SRS VS+KWT LLCLG FC GM FTNRMW +PESKG +  +  EAE+LKLVSEGCNP+ L QK V+ D + +FGEV
Sbjct:    1 MSAKIKGEYSSRSFVSRKWTILLCLGSFCVGMFFTNRMWNIPESKGMSHPSVTEAERLKLVSEGCNPKALYQKEVKRDPQALFGEV 86          

HSP 2 Score: 27.7202 bits (60), Expect = 5.636e-29
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  651 THNAIQTLDKTISNLK 698
            TH A+QTLDKTIS+L+
Sbjct:   89 THIALQTLDKTISSLE 104          
BLAST of FC929870 vs. ExPASy Swiss-Prot
Match: B3GT3_ARATH (Probable beta-1,3-galactosyltransferase 3 OS=Arabidopsis thaliana GN=B3GALT3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.866e-26
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1
Query:  388 MSLKSKGEL-TSRSVVSQKWTFLLCLGCFCAGMLFTNRMWAVPESKGFTR-TTAMEAEKLKLVSEGCNPRLLQQKVVRHDSKDIFGEV 645
            MS K KGEL  SRS+VS+KWTFLLC G FC G+LFT+RMW +PESK   R + + EAE+LKL+SEGC+P+ L QK V  D + +FGEV
Sbjct:    1 MSTKIKGELFPSRSLVSKKWTFLLCFGSFCFGILFTDRMWIIPESKDMPRPSVSTEAERLKLISEGCDPKTLYQKEVNRDPQALFGEV 88          

HSP 2 Score: 31.9574 bits (71), Expect = 1.866e-26
Identity = 14/16 (87.50%), Postives = 16/16 (100.00%), Query Frame = 3
Query:  651 THNAIQTLDKTISNLK 698
            THNAIQTLDKTIS+L+
Sbjct:   91 THNAIQTLDKTISSLE 106          
BLAST of FC929870 vs. ExPASy Swiss-Prot
Match: B3GT4_ARATH (Probable beta-1,3-galactosyltransferase 4 OS=Arabidopsis thaliana GN=B3GALT4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.799e-16
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  418 SRSVVSQKWTFLLCLGCFCAGMLFTNRMWAVPESKGFTRTTAMEAEKLKLVSEGCNPRLLQQKVVRHDSKDIFGEVFR 651
            S+S VS+KWT  LC+G FCAG+LF++RMW  PES   +R T    E+L+L SE C+     +K ++ +SKDI G+V++
Sbjct:   15 SKSFVSKKWTLFLCIGFFCAGILFSDRMWPEPESNVVSRDTVASDERLRLESEDCDS---SKKGLKRESKDILGDVYK 89          

HSP 2 Score: 24.6386 bits (52), Expect = 7.799e-16
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  657 NAIQTLDKTISNLK 698
            +AIQTLDKTIS L+
Sbjct:   92 DAIQTLDKTISKLE 105          
The following BLAST results are available for this feature:
BLAST of FC929870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
B3GT2_ARATH5.636e-2965.12Probable beta-1,3-galactosyltransferase 2 OS=Arabi... [more]
B3GT3_ARATH1.866e-2661.36Probable beta-1,3-galactosyltransferase 3 OS=Arabi... [more]
B3GT4_ARATH7.799e-1647.44Probable beta-1,3-galactosyltransferase 4 OS=Arabi... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34001C12EF PostHarvC1 Citrus clementina cDNA clone C34001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929870 ID=FC929870; Name=FC929870; organism=Citrus clementina; type=EST; length=714bp
GAGTTCTGATTCTTTCTCCCTCTCTCTCTCTTGTTAGAAAGCCAAGAACA
AAAAACTAAAGAACAAAAGCAAAGCTGAAAAGAAAGAAAAGAACAAACAA
GAAACACAGAAGATTTGCAATATCAATCATCCCTCTACCCTGTTTCAATT
TCTGTTACCTGTACTTCCATTTCTCTGCCGTAAATTTTGTATCTTGTAGT
GTACTACACTTGACTTGACTTGACTTAACGCAGTTTTAGATTCTGATTTT
TCTGTTGAGTTTTGTGAGCTCTTGGGATTTGTCCGGTTCTGCGTTGGTTT
GTCTTTTGGCGTTTGTTTTTGTACATGGGTTGTTTCTTGTGATAAGAAGA
AATAGAGGAGAAATTTTGGTCAAGAAGAACTAAACTAATGTCTTTGAAAA
GCAAAGGAGAGCTCACTTCAAGAAGCGTTGTATCACAAAAATGGACTTTT
TTGCTTTGTCTGGGATGTTTCTGTGCTGGCATGCTCTTCACTAATAGAAT
GTGGGCAGTTCCTGAATCTAAAGGCTTCACGCGGACAACTGCAATGGAAG
CGGAAAAACTAAAGCTAGTTTCAGAGGGTTGTAATCCAAGACTTTTACAG
CAGAAAGTAGTAAGGCATGACTCTAAGGATATTTTTGGGGAGGTTTTTAG
ACTCATAATGCCATACAGACATTGGATAAGACTATTTCAAATTTGAAATG
GAGCTAGCAGCTGC
back to top