FC929942

Overview
NameFC929942
Unique NameFC929942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929942_ssr25 microsatellite FC929942_ssr25:25..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14439 contig Ccv1_Contig14439:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.354e-55
Identity = 104/159 (65.41%), Postives = 122/159 (76.73%), Query Frame = 3
Query:  213 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPK--EGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            M+H ETGCQ P EGPILCINNCGFFGS ATMNMCSKC+K++++KQ+QAKLAASSI SIVN     +G E + A   +V  + VE K +  QP+  +  SE V   PK  EGP+RCS+C+KRVGLTGF CRCGNLYC  HRYSDKH+C FDYRTAARDAI
Sbjct:    1 MEHKETGCQQP-EGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVN--GGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAI 156          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. indica GN=SAP8 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.354e-55
Identity = 104/159 (65.41%), Postives = 122/159 (76.73%), Query Frame = 3
Query:  213 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPK--EGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            M+H ETGCQ P EGPILCINNCGFFGS ATMNMCSKC+K++++KQ+QAKLAASSI SIVN     +G E + A   +V  + VE K +  QP+  +  SE V   PK  EGP+RCS+C+KRVGLTGF CRCGNLYC  HRYSDKH+C FDYRTAARDAI
Sbjct:    1 MEHKETGCQQP-EGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVN--GGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAI 156          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP4_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Oryza sativa subsp. japonica GN=SAP4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.548e-53
Identity = 99/159 (62.26%), Postives = 118/159 (74.21%), Query Frame = 3
Query:  213 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKP--KEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            M+H E GCQ P EGPILCINNCGFFGS ATMNMCSKC+K++++K++QAKLAASSI SIVN           A+ +  V  + VE K + VQP+  +  SE V   P  KEGP+RC++C+KRVGLTGF CRCGN+YC  HRYSDKH C FDYRTAARDAI
Sbjct:    1 MEHKEAGCQQP-EGPILCINNCGFFGSAATMNMCSKCHKEMIMKEEQAKLAASSIDSIVNGCDGGKEHIVAASGSTAVAVAQVEAKTLVVQPTDVAGTSEEVAVVPKVKEGPNRCATCRKRVGLTGFNCRCGNMYCALHRYSDKHECQFDYRTAARDAI 158          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP2_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Arabidopsis thaliana GN=SAP2 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.155e-49
Identity = 91/160 (56.88%), Postives = 119/160 (74.38%), Query Frame = 3
Query:  213 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESV---EAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            MDHD+TGCQ+PPEGP LC NNCGFFGS ATMNMCSKC+KD++ +Q+Q    AS++      +SS+   E+  AA VD++  SVEP  +SVQPS    ++E V   EA   +GPSRC++C KRVGLTGFKCRCG+L+C +HRY+D H+C F+Y  AA++AI
Sbjct:    1 MDHDKTGCQSPPEGPKLCTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAKFASAVSG--TSSSSNIIKETFTAALVDIETKSVEPMTVSVQPSSVQVVAEVVAPEEAAKPKGPSRCTTCNKRVGLTGFKCRCGSLFCGTHRYADVHDCSFNYHAAAQEAI 158          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP4_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.265e-29
Identity = 63/154 (40.91%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  222 DETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            +E  C+ P EG  LC+NNCGFFGS ATMN+CS CY D+ LKQ Q     S++ S ++   +       A   +     + E K I +            +  P + P+RC+ C+KRVGLTGF CRCG  +C SHRY + H C FD+++A R+ I
Sbjct:    3 EEHRCETP-EGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVIAPVLENYAAELEIPTTKKTEEKKPIQIPTE---------QPSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEI 146          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana GN=SAP6 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 3
Query:  222 DETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSE--------SVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            +E  CQ P E   LC+NNCGF GS ATMN+CS CY D+ LKQ Q    +SSI S V E+S S    S +++ +   +S + P ++   PS   E+ E        + E   ++ P+RC++C+KRVGLTGFKCRCG ++C  HRY + H C +D+++A R+ I
Sbjct:    3 EEHRCQTP-ESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQ---SSSIKSTV-ESSLSVSPPSSSSSEI---SSPIIPPLLK-NPSVKLEVPEKKAVISLPTTEQNQQQRPNRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEI 155          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP9_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Oryza sativa subsp. japonica GN=SAP9 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 3
Query:  246 PEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            PE PILC+NNCGFFGS  T NMCSKCY+D +       +AA  +       +SS+ +    A   +V A++VE K  + +P             PK   +RC SC+K+VGLTGF+CRCG  +C +HRY++ H+C FDY+ A RD I
Sbjct:   17 PEAPILCVNNCGFFGSSMTNNMCSKCYRDFV---KVTTMAAPVVEKKAFTPASSSKTPLEPAKPDEVPAAAVEDKQAAQEP-------------PKPPSNRCLSCRKKVGLTGFQCRCGGTFCSTHRYTEAHDCTFDYKKAGRDQI 146          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP7_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 58/150 (38.67%), Postives = 94/150 (62.67%), Query Frame = 3
Query:  243 PPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSC---ASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            PP  P LC N CGFFGS + MN+CSKCY+ +  ++DQ  +A +++ + +   S S  +       ++++ + +E  +++ +PS    A+E  E+  ++P    +RC SC K+VG+ GFKC+CG+ +C SHRY +KH C FD++   RDAI
Sbjct:   12 PPTEPKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLKLPSCSIIAPG-QKHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAI 160          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP6_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Oryza sativa subsp. japonica GN=SAP6 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.623e-27
Identity = 64/154 (41.56%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  222 DETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            +ETG   P E PILC+NNCGFFGS  T NMCSKCY+D +         A ++ ++V +   ++ S +     V    S           S A       E  PK   +RC SC+K+VGLTGFKCRCG  +C  HRY+D H C FDY+   R+ I
Sbjct:   11 EETGVHTP-EAPILCVNNCGFFGSRMTENMCSKCYRDTV--------KAKTVATVVEKKPLASLSSTPLVTEVTDGGSG----------SVADGKQVMEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQVGREQI 145          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP1_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.057e-27
Identity = 57/146 (39.04%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  246 PEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            P  P LC+  CGFFGS + MN+CSKCY+DI   ++Q   A +++   +N        +     T  V  S           S A+ L       PK   +RC SC K+VG+TGFKCRCG+ +C +HRY + H C FD++  AR+AI
Sbjct:   13 PSEPKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEITQGVLGSGSSSSSTRGGDSAAAPLDP-----PKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAI 153          
The following BLAST results are available for this feature:
BLAST of FC929942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SAP8_ORYSJ5.354e-5565.41Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ORYSI5.354e-5565.41Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ORYSJ8.548e-5362.26Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP2_ARATH1.155e-4956.88Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ARATH2.265e-2940.91Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ARATH2.959e-2943.21Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP9_ORYSJ3.864e-2943.84Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP7_ARATH5.047e-2938.67Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ORYSJ1.623e-2741.56Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ARATH8.057e-2739.04Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionC34002B01EF PostHarvC1 Citrus clementina cDNA clone C34002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929942 ID=FC929942; Name=FC929942; organism=Citrus clementina; type=EST; length=688bp
GGGAAGCCTTTTTAAAAAAATCCAAGAGAGAGAGAGAGAGACACCCGGAA
AGGGAAACGAGGACGTCTCTAATCGGTTTTTGCCTGCTCTCTCCCCGTAG
GCCGATCTGGTCCATTTAATTTTAGGGGCTCATTGGATGCTGGCTTGAGC
TCGGGGATCGGCTTAAGGGATTCATTGCTGTTTCTTCTGTTGCTCGCAGG
GGTGGTGAAAACATGGACCATGATGAGACTGGATGCCAAGCTCCTCCTGA
GGGCCCTATCTTGTGCATCAACAATTGTGGTTTCTTTGGAAGTGTGGCTA
CTATGAATATGTGTTCCAAATGCTACAAGGATATAATGCTGAAACAGGAT
CAAGCTAAGCTTGCTGCTTCATCTATTGGAAGCATTGTGAATGAAACGTC
AAGCAGCAATGGAAGTGAATCTGTTGCTGCTGCCACTGTTGATGTGCAAG
CTAGTTCAGTGGAGCCAAAAATCATCTCTGTGCAGCCATCATGTGCTTCA
GAATTGAGCGAGAGTGTGGAGGCAAAGCCGAAGGAGGGTCCCAGCCGGTG
CAGCAGTTGCAAGAAGCGTGTTGGTTTAACAGGATTCAAATGTCGCTGTG
GTAACTTATACTGTGTGTCACATCGCTATTCGGACAAACATAACTGCCCC
TTTGACTACCGCACTGCTGCTAGGGATGCTATAATTAA
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