FC929948

Overview
NameFC929948
Unique NameFC929948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12635 contig Ccv1_Contig12635:1..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.950e-35
Identity = 92/182 (50.55%), Postives = 109/182 (59.89%), Query Frame = 3
Query:  132 IPRALRCTVAPSATSASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXS--VRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            +PRALR  V P A S SR FNTNA   Y                                    TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIR           S   RR+TSRI+LPEK+Y+TD+IKAEMKNGVLKV +P
Sbjct:   20 VPRALRA-VRPVAAS-SRLFNTNAARNYEDGVDRNHHSNRHVSRHGGDFFSHILDPFTP-----TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIP 194          
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.545e-32
Identity = 84/168 (50.00%), Postives = 99/168 (58.93%), Query Frame = 3
Query:  162 PSATSASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR--XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            P A+SASR FNTNA+ QY                                     RSLSQVLN +D +T+NP  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+             S RR++SRIDLPEKLY+ D IKAEMKNGVLKVTVP
Sbjct:   23 PVASSASRSFNTNAMRQYDQHSDDRNVDVYRHSFPRTRRDDLLLSDVFDPFSPP-RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVP 186          
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.495e-32
Identity = 86/190 (45.26%), Postives = 103/190 (54.21%), Query Frame = 3
Query:  132 IPRALRCTVAPSATS------ASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR----XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            + R L  ++AP + S      +SR FNTNAV  Y                                    TRS+SQVLN MDQ  ENP  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIR                 RR+TSRI LP+K+Y+ D+IKAEMKNGVLKV +P
Sbjct:    7 LKRLLSSSIAPRSRSVLRPAVSSRLFNTNAVRSYDDDGENGDGVDLYRRSVPRRRGDFFSDVFDPFSP--TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIP 194          
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.066e-30
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 3
Query:  408 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+           S RRYTSRIDLP+KLY+ DQI+AEMKNGVLKV VP
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVP 195          

HSP 2 Score: 27.335 bits (59), Expect = 4.066e-30
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  302 CV*SIFTNKEPEPGPELHGSDDGES 376
            CV SIF++ E EPG E  G   G+S
Sbjct:   72 CVGSIFSDSEFEPGSEHDGPGHGQS 96          

HSP 3 Score: 25.7942 bits (55), Expect = 4.066e-30
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  147 RCTVAPSATSASRFFNTNAVHQY 215
            R  + P+A+++ R F+TNA+ QY
Sbjct:   18 RSLLRPAASASHRSFDTNAMRQY 40          
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.176e-30
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  324 TRSLSQVLNFMDQMTENPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            TRS+ Q++N MDQ+ ENPF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+             RRY+SRI+L   LY+ D IKAEMKNGVLKVTVP
Sbjct:   74 TRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVP 188          
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 56/113 (49.56%), Postives = 74/113 (65.49%), Query Frame = 3
Query:  327 RSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV--RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            +SL ++L+ MD +   P        LRRGW+AKE+++AL+L +DMPGLGKE V+V  EQN+LVI+                RY+ RI+L  ++YR DQIKAEMKNGVLKV VP
Sbjct:   93 QSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVP 204          
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS26M_ORYSJ (26.2 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP26.2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 55/119 (46.22%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  330 SLSQVLNFM-DQMTENPFFSGTRG----GLRRG--WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            SL ++L  M D         GT G      RRG  W AKE DDA++L + MPGLGKE V+V  EQN+LVI+                RYT RI+LP   ++ D+IKAEMKNGVL+V VP
Sbjct:  114 SLGRLLALMEDAAVATAAAPGTNGLATAAARRGGWWVAKEDDDAVHLKVSMPGLGKEHVKVWAEQNSLVIKGEGEKDPEDDADAAPPRYTRRIELPADAFKMDKIKAEMKNGVLRVAVP 232          
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 49/122 (40.16%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  327 RSLSQVLNFMDQMTEN--PFFSGTRGG-----LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            R++ Q+L+ MD+M E+  P     RGG     +R  WD KE +  + +  DMPGL KEDV++S+E N LVI    +           SV  Y +R+ LP+   + D+IKAE+KNGVL +T+P
Sbjct:   93 RTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEK-DKIKAELKNGVLFITIP 213          
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 47/122 (38.52%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  327 RSLSQVLNFMDQMTENPF-FSGTR---GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTS---RIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            RS+ Q+L+ MD++ E+   F G     G +R  WD K+ +  + +  DMPGL KEDV+VS+E + LVI    +           S R Y+S   R+ LP+   + D++KAE+KNGVL +T+P
Sbjct:   47 RSMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEK-DKVKAELKNGVLYITIP 167          
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 41/121 (33.88%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  327 RSLSQVLNFMDQMTENPF-FSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI-----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            R++ Q+++ MD++ E+   F G+R    G +R  WD K+ ++ + +  DMPGL KE+V+VS+E + LVI     +           +   Y +R+ LP+ + + D++KAE+KNGVL +++P
Sbjct:  108 RTMRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDK-DKVKAELKNGVLLISIP 227          
The following BLAST results are available for this feature:
BLAST of FC929948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HS235_ARATH1.950e-3550.5523.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA1.545e-3250.00Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS23M_ARATH4.495e-3245.2623.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_SOYBN4.066e-3066.67Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS23C_CHERU7.176e-3055.65Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS24M_ORYSJ3.570e-2149.5624.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ORYSJ1.552e-1646.2226.2 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH2.241e-1540.1625.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN3.578e-1338.52Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY7.971e-1333.88Small heat shock protein, chloroplastic OS=Petunia... [more]

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Properties
Property NameValue
Genbank descriptionC34002B07EF PostHarvC1 Citrus clementina cDNA clone C34002B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929948 ID=FC929948; Name=FC929948; organism=Citrus clementina; type=EST; length=659bp
GGTCTTCAGCAAGAAATCAGCCGCACTCACAAAAAGTATTTTGAAATCTC
TGCATTGTTTCGTGCTTTCTTTAAGAATTCGGCTCAATGGCGTCCTCTCT
TGCTCTCAAGAGGCTTGCTTCTTCTAATGTCATACCCAGGGCTTTACGCT
GCACCGTCGCTCCTTCTGCTACTTCAGCATCTCGGTTCTTCAACACAAAC
GCTGTTCATCAATACGATGACGGCGGAGACGACCGTGATCTCGACATTGA
TCGCCGTTCCGCTCGCTCTTTCCCTCGCCGTCGTGACGACTTCTTCTCAG
ATGTGTTTGATCCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAAC
TTCATGGATCAGATGACGGAGAATCCTTTCTTCAGCGGCACACGTGGTGG
ACTGCGCAGAGGCTGGGATGCTAAAGAAACCGATGATGCGTTGAACCTCA
GCATCGACATGCCAGGGCTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAG
CAGAACACGCTGGTGATCAGAGGCGAGGGCGGAAAAGAAGGAGAGGACGA
AGAGAGCGTGCGTAGGTACACCAGCAGGATTGATTTGCCAGAGAAGCTCT
ACAGGACTGATCAGATCAAGGCTGAGATGAAGAATGGTGTGCTGAAAGTG
ACGGTGCCC
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