FC929977

Overview
NameFC929977
Unique NameFC929977
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929977 vs. ExPASy Swiss-Prot
Match: FB121_ARATH (F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.504e-50
Identity = 106/232 (45.69%), Postives = 144/232 (62.07%), Query Frame = 1
Query:   46 MLFFLISCFSVILLSKSLAKPPMKSDWRLLSPWFWRELSSFLVSWFQKGGLVIRPLKQKMSFGSKPANTEKEKISLLDLPDLTLECILEKLSPAGLCNMAGVCSSLRDRCTSDRLWEKHMKQKWGRVIGDVAKREWQWHLVSR--QRSSLMNNKKQTGFFWSLYSCWPFSWSERKTESNTEPRSSLPVDSIMAWYVSLESGKFWFPAQVYNRENGHVGFMLSCYDAQLSYDS 735
            +L+FLI+C S    +KSL+ PP            W   +  L+S++      +  L Q       PA+   +++S+LDLP+L L+CIL+ L P+GLC+MA VCSSLR+RC SD LWEKH+K KWG+++G  A REWQ ++ S      S  +     GF   +      S   R+ +      SSLP+DS M+ Y+SLE+G+FWFPAQVYNRENGHVGFMLSCYDA+LSYD+
Sbjct:    2 LLYFLITCLSFFFFTKSLSLPP------------WASETKTLLSFYFIKNPFMNTLHQTKH---DPASPVIDQMSVLDLPELALDCILDLLPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLGFAKIISLIRSLSSVFREDKQRRGYASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDT 218          
BLAST of FC929977 vs. ExPASy Swiss-Prot
Match: FB132_ARATH (F-box protein At2g41170 OS=Arabidopsis thaliana GN=At2g41170 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 101/198 (51.01%), Postives = 133/198 (67.17%), Query Frame = 1
Query:  169 LVSWFQKGGLV--IRPLKQKMSFGSKPANTEKE-KISLLDLPDLTLECILEKLSPAGLCNMAGVCSSLRDRCTSDRLWEKHMKQKWGRVIGDVAKREWQWHLVSRQR--SSLMNNKKQTGFFWS---LYSCWPFSW--SERKTESNTEPRSSLPVDSIMAWYVSLESGKFWFPAQVYNRENGHVGFMLSCYDAQLSYD 732
            +VSW  +  +   IR L  +     K  N E E K+SLLDLPDLTL+CILEKLSP+ LC M  VCS LRD+C SD LWEKHM+ KWGR++GD A +EW+ H+ +  R  +S  ++ +++   WS   + +  PF+W  S    E+        P+DS+M WY +LE+GKFWFPAQVYNRENGHVGFM+SCYDA++ YD
Sbjct:   22 IVSWLARSIIRNGIRTLTWRKETKRKKKNQEDENKMSLLDLPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLWEKHMETKWGRLMGDAAIQEWKSHVATIMRCLTSSSSSSRKSKPNWSSRFVANLKPFAWLSSNHGCENRGSSSYLAPIDSVMYWYSNLENGKFWFPAQVYNRENGHVGFMMSCYDAKIRYD 219          
BLAST of FC929977 vs. ExPASy Swiss-Prot
Match: FB118_ARATH (F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.227e-47
Identity = 107/237 (45.15%), Postives = 140/237 (59.07%), Query Frame = 1
Query:   46 MLFFLISCFSVILLSKSLAKPPMKSDWRLLSPWFWRELSSFLVSWFQKGGLVIRPLKQKMSFGSKPANTEKEKISLLDLPDLTLECILEKLSPAGLCNMAGVCSSLRDRCTSDRLWEKHMKQKWGRVIGDVAKREWQWHLVS-------RQRSSLMNNKKQTGFFWSLYSCWPFSWSERKTESNTEPRSSLPVDSIMAWYVSLESGKFWFPAQVYNRENGHVGFMLSCYDAQLSYDS 735
            +L+ LI+C S    SKSL+ P             W   +  L+S++    L    L Q     + P      K+S+LDLPDL L+CILE L P+ LC MA VCSSLR+RC SD LWEKH+K KWG+++G  A +EWQ +L S         ++S +   K      SL S +      R  +      SS+P+DS M +Y+SLE+G+FWFPAQVYNRENGHVGFMLSCYDA+LSYD+
Sbjct:    2 LLYLLITCLSFFFFSKSLSFPQ------------WASKTKNLLSFYFSKYLFTNSLHQITPDLASPV---LGKMSILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLWEKHLKTKWGKILGPSAHKEWQCYLSSPYHLDSPHHKTSHLGLAKIISLMRSLSSIF------RDDDHRRRYPSSIPLDSTMNFYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDT 217          
The following BLAST results are available for this feature:
BLAST of FC929977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB121_ARATH4.504e-5045.69F-box protein At2g32560 OS=Arabidopsis thaliana GN... [more]
FB132_ARATH1.311e-4951.01F-box protein At2g41170 OS=Arabidopsis thaliana GN... [more]
FB118_ARATH1.227e-4745.15F-box protein At2g26850 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC34002E01EF PostHarvC1 Citrus clementina cDNA clone C34002E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929977 ID=FC929977; Name=FC929977; organism=Citrus clementina; type=EST; length=737bp
GGCTGAAACTGAACCAACCCATTTAGAAATTAGCTCCCGAGTTCCATGCT
TTTCTTCTTGATTTCTTGTTTCTCTGTCATATTACTATCAAAGTCTTTGG
CTAAACCACCGATGAAGAGTGATTGGAGATTGTTGTCTCCATGGTTTTGG
AGGGAATTATCAAGCTTTTTGGTTTCGTGGTTTCAAAAAGGCGGCCTTGT
CATTAGGCCATTGAAGCAGAAGATGAGTTTTGGATCAAAACCTGCAAATA
CGGAGAAAGAGAAAATTTCCCTCTTGGATTTGCCTGATTTAACCTTGGAA
TGCATTCTTGAGAAGCTTTCACCAGCTGGTTTGTGTAACATGGCTGGAGT
TTGCAGTTCTCTTCGAGATAGATGTACAAGTGATCGTTTGTGGGAGAAAC
ACATGAAGCAGAAATGGGGGAGAGTTATTGGTGATGTTGCCAAAAGAGAA
TGGCAATGGCACTTGGTCTCAAGACAGAGATCAAGCCTTATGAATAACAA
GAAACAAACAGGATTTTTCTGGTCTCTCTATAGCTGTTGGCCTTTTTCTT
GGAGTGAACGAAAGACGGAGAGCAATACTGAGCCGAGAAGTTCATTACCA
GTTGATTCAATCATGGCTTGGTATGTTTCTCTTGAAAGTGGCAAATTCTG
GTTCCCAGCTCAGGTCTATAACCGTGAGAATGGGCATGTTGGGTTTATGC
TGTCTTGTTACGATGCTCAGCTCAGCTATGATTCCCG
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