FC929988

Overview
NameFC929988
Unique NameFC929988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929988_ssr76 microsatellite FC929988_ssr76:76..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC929988 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.215e-55
Identity = 119/230 (51.74%), Postives = 141/230 (61.30%), Query Frame = 1
Query:  169 TVKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGKI--GELKKLVE---------------------------EGKIKYIGL--------------------------------------SEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKDDFRKCM 657
            +V RIKLGSQGLEVSAQGLGCM MS  YGPP+PE +MI LIHHA+++G+T LDTSD+YGP+TNE+L+GK   G +++ VE                           EG  K +G+                                      SEA A+TIRRAHAVHPITAVQLEWSLWSRD E +I+PTCRELGIGIVAY PLG+GF SSG KLV+S S+ DFRK M
Sbjct:    7 SVPRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESEMIKLIHHAVDAGVTFLDTSDVYGPHTNEVLLGKALQGGVREKVELATKFGVSFADGKREIHGDPAYVRTACEGSFKRLGVDCIDLYYQHRIDKRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDAEEDIIPTCRELGIGIVAYSPLGRGFFSSGAKLVDSLSEQDFRKHM 236          
BLAST of FC929988 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.686e-44
Identity = 111/234 (47.44%), Postives = 128/234 (54.70%), Query Frame = 1
Query:  172 VKRIKLGSQGLEVSAQGLGCMAMSCLYGPPEPEPDMIALIHHAINSGITLLDTSDIYGPYTNEILVGK-------------------IGELKKLVEEGKIKYIG----LSEACAATIRR----------AHAV--------------------------------------HPITAVQLEWSLWS---RDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKDDFRK 651
            V RIKLGSQGLEVSAQGLGCM MS  YGPP+PEPDMI LIHHAINSGITLLDTSD+YGP+TNEIL+GK                   +G+ KK   EGK    G    +  AC A+++R           H V                                      H +  +      WS   RDVE EI+PTCRELGIGIVAY PLG+GFLSSGPKL+E  S +D+RK
Sbjct:    8 VPRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMIQLIHHAINSGITLLDTSDVYGPHTNEILLGKALKGGTRERVVLATKFGIVLGDEKK--AEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEITVGELKKLVEEGKLKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVAYSPLGRGFLSSGPKLLEDMSNEDYRK 239          
BLAST of FC929988 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.959e-19
Identity = 61/134 (45.52%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  268 EPDMI--ALIHHAINSGITLLDTSDIYGPYTNEILVGKI-GELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAE---IVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKDDFRK 651
            EPD I  AL       GI  +D   ++  ++ E  + KI G LKK VE GKI+YIGLSE  A TIRRA AV+P++AVQ+E+S +S ++E     ++  CRE  I IV Y PLG+GFL+   K  + F + DFR+
Sbjct:  100 EPDYIEKALDLSLKRLGIDCIDLYYVHR-FSGETPIEKIMGALKKCVEAGKIRYIGLSECSANTIRRAAAVYPVSAVQVEYSPFSLEIERPEIGVMKACRENNITIVCYAPLGRGFLTGAYKSPDDFPEGDFRR 232          
BLAST of FC929988 vs. ExPASy Swiss-Prot
Match: PLR1_SCHPO (Pyridoxal reductase OS=Schizosaccharomyces pombe GN=plr1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.993e-15
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  385 LKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAE-IVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSK 636
            LK  V+ GKI  +GLSE  A TI+RAHAV PI AV++E+SL+SRD+E   I+  CR+L I I+AY P  +G L+   K VE   +
Sbjct:  138 LKGFVDSGKISCVGLSEVSAETIKRAHAVVPIAAVEVEYSLFSRDIETNGIMDICRKLSIPIIAYSPFCRGLLTGRIKTVEDLKE 222          
BLAST of FC929988 vs. ExPASy Swiss-Prot
Match: PLR2_SCHPO (Probable pyridoxal reductase 2 OS=Schizosaccharomyces pombe GN=SPCC1281.04 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  385 LKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAE-IVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKDDFRK 651
            LK  V+ G+I  +GLSEA A +I+RA A+ PI AV+ E+SL+SRD+E   I+ TC +L I I+AY P   G L+   K  E     DF K
Sbjct:  138 LKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIEKNGILDTCTQLSIPIIAYAPFCHGLLTGRVKTAEDLK--DFIK 225          
The following BLAST results are available for this feature:
BLAST of FC929988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IN22_MAIZE2.215e-5551.74IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
A115_TOBAC6.686e-4447.44Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
YAKC_SCHPO1.959e-1945.52Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
PLR1_SCHPO4.993e-1550.59Pyridoxal reductase OS=Schizosaccharomyces pombe G... [more]
PLR2_SCHPO1.360e-1246.67Probable pyridoxal reductase 2 OS=Schizosaccharomy... [more]
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Properties
Property NameValue
Genbank descriptionC34002E12EF PostHarvC1 Citrus clementina cDNA clone C34002E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929988 ID=FC929988; Name=FC929988; organism=Citrus clementina; type=EST; length=657bp
GGGTGGCTTTTCCATCATAGGCGGAGGGAAACACCTTAGTGTTGCACTGT
AACAGAACCAAGAACATATACACACCACACACACACACACACACAAATAC
ATCTTTCAGTGAGTGCCTTAACATAATATAGTATCAGTAACAGTAACAGT
AACAAGGAAATGGTGGGGACAGTGAAGAGAATCAAGCTAGGTTCACAAGG
TCTGGAGGTTTCAGCACAAGGCTTAGGGTGCATGGCCATGTCCTGTTTAT
ACGGGCCACCGGAGCCCGAACCCGATATGATCGCTTTGATCCACCATGCC
ATTAACAGTGGCATCACTTTACTCGACACCTCCGATATTTACGGACCCTA
CACCAATGAAATCCTTGTGGGCAAAATTGGAGAGCTCAAGAAACTAGTTG
AAGAGGGTAAAATAAAGTATATAGGTCTATCTGAGGCTTGTGCTGCAACA
ATTAGAAGAGCTCATGCTGTCCATCCAATAACAGCTGTGCAGTTGGAATG
GTCCTTGTGGTCACGAGATGTGGAGGCAGAGATAGTTCCTACTTGCAGGG
AACTTGGCATTGGAATTGTTGCGTATGGTCCTCTAGGACAAGGATTTCTA
TCATCAGGGCCTAAGTTGGTTGAAAGCTTTTCAAAAGACGATTTTAGAAA
GTGCATG
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