FC930010
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15 Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393 DE ++VGGL + E+S+ +VF KYG V V +V DR S R + +GFVTF NP A DA+ MNG+++DGR +RV + G+ SN R Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA---GKSSNDRR 90
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15 Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 121 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393 + DE +++GGL + NE+S+ +VF KYG + V +V DR T R + +GFVTF NP A DA+ MNG+ +DGR +RV + G+ S R Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA---GKSSGDRR 89
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14 Identity = 36/88 (40.91%), Postives = 59/88 (67.05%), Query Frame = 1 Query: 130 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 E +VGGL ++ N++ +++ F ++G V+ KI+NDR S R + +GFVTF + ++ DAI +MNG+ +DGRV+ V+E +RG G Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGGGGG 92
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14 Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393 DE ++VGGL + +E + VF KYG + V +V DR T R + +GFVTF N A DA+ MNG+T+DGR +RV + G+ SN R Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA---GKSSNDRR 90
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14 Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 130 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393 E +VGGL ++ N++S+ + F ++G + KI+NDR T R + +GFVTF + +S DAI MNG+ +DGR + V+E +RG GR Sbjct: 5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSGGGGGR 93
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14 Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA+ MNG+++DGR +RV + + G Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14 Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA+ MNG+++DGR +RV + + G Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14 Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 130 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 393 E +VGGL ++ + + + F ++G V+ KI+NDR T R + +GFVTF + +S DAI++MNG+ +DGR + V+E +RG GR Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGGGGGGR 93
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13 Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA+ MNG+++DGR +RV + + G Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13 Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA+ MNG+++DGR +RV + + G Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92 The following BLAST results are available for this feature:
BLAST of FC930010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930010 ID=FC930010; Name=FC930010; organism=Citrus clementina; type=EST; length=714bpback to top |