FC930015

Overview
NameFC930015
Unique NameFC930015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14318 contig Ccv1_Contig14318:29..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  225 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S      K +FFL
Sbjct:  268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 426          
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  225 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S      K +FFL
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427          
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 79/158 (50.00%), Postives = 109/158 (68.99%), Query Frame = 3
Query:  228 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            +GFLGLG+MG  +  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y++MSTVD ET  ++S+ ITS+GG FLEAPVSGS+Q +  G LVI++AG++++Y++  S      K +FF+
Sbjct:  178 IGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFI 335          
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  225 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S      K +FFL
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427          
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.887e-40
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  225 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S      K +FFL
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427          
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.631e-40
Identity = 81/159 (50.94%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  225 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   +ADP AA  +V    GVL+ I PGK Y+DMSTVD ET  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ +Y++  S      K +FFL
Sbjct:  250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFL 408          
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.250e-38
Identity = 78/159 (49.06%), Postives = 107/159 (67.30%), Query Frame = 3
Query:  225 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            ++GFLGLG+MG  I  NLL+ G  VTVW+RT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I P K Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S      K +FFL
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 427          
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.529e-36
Identity = 78/159 (49.06%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  225 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  K       GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S      K +FFL
Sbjct:  268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL 420          
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 139.043 bits (349), Expect = 2.284e-32
Identity = 72/181 (39.78%), Postives = 109/181 (60.22%), Query Frame = 3
Query:  159 VDLKSGKNLEHRGGRY*KNKKMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            +D+ S  N      R  K  +++ GFLGLG+MG  I  NL+++G  V VWNR+  KC +    GA V  +P++V++   +T   ++DP  A  +VF   GV+     GKGY++M+ VD ETS  I+ AI SKGG +LEA + GSK  AE G L+IL++G++ L++E  S      + +F+L
Sbjct:  262 IDMSSVSNAVQ--SRNIKASQLKFGFLGLGVMGCGIVKNLIKSGHSVVVWNRSAHKCRKFQEVGAEVADTPSDVVEMTDVTYSCVSDPQVAKDMVFGNCGVMSANLAGKGYVEMTGVDPETSNDINEAIISKGGRYLEAQIQGSKNQAEEGTLIILASGDRLLFEECQSCFEAISRNSFYL 440          
BLAST of FC930015 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 69/160 (43.12%), Postives = 100/160 (62.50%), Query Frame = 3
Query:  222 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVNWKXAFFL 701
            ++ GFLGLGIMG  +  NLL +G  V VWNRT +KC +    GA V  +P++VI+   +T   +ADP  A  +VF   GV+     GKGY++M+ VD ETS  I+  I +KGG +LEA + GSK  AE G L+IL+AGE+ L++E  +      + +F++
Sbjct:  274 LKFGFLGLGIMGCGMVKNLLNSGHSVVVWNRTATKCRKFQEAGAEVADTPSDVIEMTDVTFSCVADPQVAKELVFGNCGVMSANLVGKGYVEMTGVDPETSHDIAEQIIAKGGRYLEAQIQGSKNQAEEGTLIILAAGERLLFEECQTCFEAISRNSFYM 433          
The following BLAST results are available for this feature:
BLAST of FC930015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GLYR1_RAT3.887e-4050.31Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_HUMAN3.887e-4050.31Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_DANRE3.887e-4050.00Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_CHICK3.887e-4050.31Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_BOVIN3.887e-4050.31Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_XENTR6.631e-4050.94Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_PONAB1.250e-3849.06Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLYR1_MOUSE1.529e-3649.06Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
GLYR1_ANOGA2.284e-3239.78Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]
GLYR1_AEDAE5.089e-3243.13Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]

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Properties
Property NameValue
Genbank descriptionC34002H04EF PostHarvC1 Citrus clementina cDNA clone C34002H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930015 ID=FC930015; Name=FC930015; organism=Citrus clementina; type=EST; length=701bp
ACTTGAAATTTAGTGTTCCATTCAAGCTGATAATGATATTTTGATTGTAT
AATACATTTTTCTGTTGTTTAATATAAAATGACAATGATATAGATCGTAT
CAAGGATTAAAGATTCTTGCTTTATGTAAGTTTGGACTCTGCTGAGAGTT
GCAAGTAAGTAGATCTGAAAAGCGGAAAAAATTTAGAACACAGAGGAGGA
AGATATTGAAAAAACAAGAAAATGGAAGTGGGGTTTCTGGGTTTAGGAAT
TATGGGCAAGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTA
CTGTATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGT
GCTACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTAC
TATTGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACA
AAGGTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATG
TCAACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATC
AAAAGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTG
CAGAAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTAT
GATGAAGCAATTTCAGCTCTCAATGTAAATTGGAAGAANGCCTTCTTTTT
G
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