FC930047

Overview
NameFC930047
Unique NameFC930047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.678e-59
Identity = 112/231 (48.48%), Postives = 156/231 (67.53%), Query Frame = 2
Query:    5 NSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGD--DSELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMTELFE--NGMQSLRMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            +S++ PS+ E+     +TTVPPRYVR + D   + +D     ++P+IDM  L S    DSE+EKLD ACKEWGFFQL+NHG+ SS ++KVK+EIQ+FFNLP++EKKKFWQ+P +IEGFGQ F+ SE+QKLDW   F     P                 D LE+Y +E++++   ++  MA+AL + P ++ +LF+  + +QS+RMNYYPPCPQP+QV+G  PHSD   LT
Sbjct:   10 SSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLT 240          
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 82/230 (35.65%), Postives = 121/230 (52.61%), Query Frame = 2
Query:    2 GNSLVEPSILELANNLPLTTVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDS--ELEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMTELFENGMQSLRMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            G SL   ++  LA    L  +P RYVRPE++H  +   D+S + +PVID+  LL    +  EL K   AC +WGFFQL+NHGV   ++EK+K + ++FF LP  EK  + Q P  +EG+GQ F+TSEEQKLDW     + T P                 + +E Y  EL+ + + +  +MAK L ++   +T+     + +      P      + LG  PHSD + LT
Sbjct:    9 GGSLPVENVQVLAGK-ELKNLPNRYVRPELEHDDVVPIDNSLE-IPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRT-VFNREDELLPSMSSCGEGLGLSPHSDATGLT 235          
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 73/237 (30.80%), Postives = 116/237 (48.95%), Query Frame = 2
Query:   20 PSILELANNLPLTTVPPRYVRPE------IDHPLIRNDDSSAQQLPVIDMHTLLSGDDSELEK----LDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMTELF---ENGMQSLRMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            P + ELA +  L T+P  YVRPE      I + L     S   QLP ID+  + S D+   +K    L  A  +WG   L+NHG+   L+++VKA  +EFF LP++EK+ +   Q  G+++G+G     +   +L+W   F     P                      Y  +L+ L  KIL +++  L ++   + +     E+ +  +++N+YP CPQPE  LG+  H+D S LT
Sbjct:   10 PRVEELARS-GLDTIPKDYVRPEEELKSIIGNILAEEKSSEGPQLPTIDLEEMDSRDEEGRKKCHEELKKAATDWGVMHLINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKPPDYIPATSEYAKQLRALATKILSVLSIGLGLEKGRLEKEVGGAEDLIVQMKINFYPKCPQPELALGWEAHTDVSALT 245          
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 65/225 (28.89%), Postives = 110/225 (48.89%), Query Frame = 2
Query:   53 LTTVPPRYVRPE-----IDHPLIRNDDSSAQQLPVIDMHTLLSGDDSEL----EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMTEL---FENGMQSLRMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            ++T+P  Y+RP+     I     +  ++   Q+P ID+  + S ++       EKL  A  +WG   L+NHG+S  L++KV+   + FF+LPI++K+K+   Q  G I+G+G     +   +L+W   F     P                 +    Y  +L+ L  K+L +++  L +D   + +     E  +  +++NYYP CPQPE  LG   H+D S LT
Sbjct:   19 ISTIPKEYIRPKDELVNIGDIFEQEKNNEGPQVPTIDLKEIESDNEKVRAKCREKLKKAAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 243          
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 74/243 (30.45%), Postives = 116/243 (47.74%), Query Frame = 2
Query:   14 VEPSILELANNLPLTTVPPRYVRPEIDHPLIRN-----DDSSAQQLPVIDMHTLLSGDD---SEL-----EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMTELFENGMQSL----RMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            V P +  L+++  + ++P  Y+RP+ +   I N           Q+P ID+  + S D+    E+     E+L  A  EWG   L+NHG+S  L+ +VK   + FFNLP++EK+K+   Q  G I G+G     +   +L+W   F     P                      Y  +L++L  KIL +++  L ++   + E    GM+ L    ++NYYP CPQPE  LG   H+D S LT
Sbjct:    5 VAPRVESLSSS-GIQSIPKEYIRPQEELTSIGNVFEEEKKDEGPQVPTIDLKDIESEDEVVRREIRERCREELKKAAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRL-EKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALT 245          
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 66/226 (29.20%), Postives = 108/226 (47.79%), Query Frame = 2
Query:   53 LTTVPPRYVRPE-----IDHPLIRNDDSSAQQLPVIDMHTLLSGDDSE----LEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMTELFENGMQSL----RMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            + ++P  Y+RP+     I+   +        Q+P ID+  + S D+      +E+L  A  +WG   L+NHG+ + L+E+VK   +EFF+L ++EK+K+   Q  G I+G+G     +   +L+W   F     P                 +    Y   L+ L  K+   ++  L ++P D  E    G++ L    ++NYYP CPQPE  LG   H+D S LT
Sbjct:   15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEP-DRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 239          
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 61/210 (29.05%), Postives = 106/210 (50.48%), Query Frame = 2
Query:   74 YVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDDSE------LEKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMTELFENGMQSLRMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            +VR E + P +  +  S  ++P+I +  L   DDS+        K+  AC++WG FQ+++HG+ S L+ ++    +EFF LP +EK ++    G   GF    +   +  +DW    T F+ P                    EVY  +L  L  K+L+++++A+ ++  D+T+   +  Q + +NYYP CPQP+  LG   H+D   +T
Sbjct:   19 FVRDEDERPKVAYNQFS-NEIPIISLAGL--DDDSDGRRPEICRKIVKACEDWGIFQVVDHGIDSGLISEMTRLSREFFALPAEEKLEYDTTGGKRGGFTISTVLQGDDAMDWREFVTYFSYPINARDYSRWPKKPEGWRSTTEVYSEKLMVLGAKLLEVLSEAMGLEKGDLTKACVDMEQKVLINYYPTCPQPDLTLGVRRHTDPGTIT 225          
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 72/236 (30.51%), Postives = 109/236 (46.19%), Query Frame = 2
Query:   20 PSILELANNLPLTTVPPRYVRPEIDHPLIRN-----DDSSAQQLPVIDMHTLLSGDDSELEK---LDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFW--QQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMTELFENGMQSL----RMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            PS +E      +  +P  YVRP+ +   I N           Q+P ID+  + S D    EK   L  A  EWG   L+NHG+S  L+ +VK   + FF+ P++EK+K+   Q  G+++G+G     S   +L+W   F     P                      Y  +++ L  KIL +++  L ++   + E    GM+ L    ++NYYP CPQPE  LG   H+D S LT
Sbjct:    9 PSRVESLAKSGIQAIPKEYVRPQEELNGIGNIFEEEKKDEGPQVPTIDLKEIDSEDKEIREKCHQLKKAAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRL-EKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTDVSALT 243          
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 61/212 (28.77%), Postives = 107/212 (50.47%), Query Frame = 2
Query:   59 TVPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTL--LSGDDSEL-EKLDHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXXDDLEVYLTELKNLTLKILDLMAKALRMDPNDMTELFENGMQSLRMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            T+  ++VR E + P +  +D S  ++P+I +  +  + G   E+ +K+  AC++WG FQ+++HGV + L+ ++    +EFF LP +EK +F    G   GF        E   DW    T F+ P                 +  + Y  EL  L  K+L ++++A+ +D   +T+   +  Q + +N+YP CPQP+  LG   H+D   +T
Sbjct:   15 TLQQKFVRDEDERPKVAYNDFS-NEIPIISLAGIDEVEGRRGEICKKIVAACEDWGIFQIVDHGVDAELISEMTGLAREFFALPSEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIRHRDYSRWPDKPEAWREVTKKYSDELMGLACKLLGVLSEAMGLDTEALTKACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTIT 225          
BLAST of FC930047 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 60/217 (27.65%), Postives = 108/217 (49.77%), Query Frame = 2
Query:   62 VPPRYVRPEIDHPLIRNDDSSAQQLPVIDMHTLLSGDD---SELEKL-DHACKEWGFFQLMNHGVSSSLVEKVKAEIQEFFNLPIDEKKKFWQQPGDIEGFGQLFITSEEQKLDWGYGFTMFTLPTXXXXXXXXXXXXXXXX-----DDLEVYLTELKNLTLKILDLMAKALRMDPNDMTELFENGMQSLRMNYYPPCPQPEQVLGF*PHSDGSVLT 685
            +P +++ PE + P    D +    +P+ID+  +LSGD    +E+ +L   AC+  GFFQ++NHG+ + L+      +  FF +P+ EK++  ++PG+  G+   F      KL W    +  + P+                     +    Y +E+  L+L+I++++ ++L +        FE     +R+NYYPPC +P + LG  PH D + LT
Sbjct:   17 IPSQFIWPEGESPT--PDAAEELHVPLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLT 231          
The following BLAST results are available for this feature:
BLAST of FC930047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
SRG1_ARATH1.678e-5948.48Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA1.934e-3135.65S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
LDOX_PERFR1.028e-2430.80Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
LDOX_MALDO5.639e-2328.89Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_VITVI1.256e-2230.45Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_ARATH1.256e-2229.20Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
FNSI_PETCR2.799e-2229.05Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
LDOX_PETHY4.774e-2230.51Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
FL3H_MALDO3.094e-2128.77Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
GAO1B_WHEAT4.041e-2127.65Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionC34003C01EF PostHarvC1 Citrus clementina cDNA clone C34003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930047 ID=FC930047; Name=FC930047; organism=Citrus clementina; type=EST; length=700bp
GGGGAATTCTCTCGTGGAGCCTTCGATTCTGGAGCTGGCAAATAATCTGC
CACTGACAACTGTTCCGCCACGTTATGTTCGCCCTGAGATAGACCATCCC
TTGATTCGCAACGACGATTCTTCAGCACAACAACTTCCAGTCATTGACAT
GCACACGTTGCTCTCTGGGGATGACTCAGAGCTTGAGAAGCTTGACCATG
CATGTAAAGAGTGGGGTTTCTTTCAGTTGATGAATCATGGAGTGAGCAGT
TCATTGGTGGAGAAAGTGAAAGCAGAGATTCAAGAATTCTTTAATCTTCC
AATTGATGAGAAAAAGAAGTTTTGGCAGCAGCCAGGAGATATTGAGGGAT
TTGGGCAGCTTTTTATTACGTCTGAAGAGCAGAAGCTTGATTGGGGATAC
GGCTTTACTATGTTCACTCTCCCAACCCATCTGAGGAAACCCCACTTGTT
CCCCAAGTTGCCTCTTCCATTCAGAGATGACTTGGAAGTTTACTTAACGG
AACTTAAAAATCTTACCTTGAAAATCCTTGACCTAATGGCTAAAGCTCTA
AGAATGGATCCCAATGACATGACAGAGCTGTTTGAAAACGGGATGCAATC
GTTAAGGATGAATTATTATCCTCCTTGTCCGCAACCAGAGCAAGTTCTCG
GCTTTTAGCCTCATTCTGATGGCTCCGTACTCACATCCTCCTCCAAATCA
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