FC930050

Overview
NameFC930050
Unique NameFC930050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930050_ssr53 microsatellite FC930050_ssr53:53..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15095 contig Ccv1_Contig15095:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.733e-64
Identity = 116/154 (75.32%), Postives = 136/154 (88.31%), Query Frame = 1
Query:  235 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAY 696
            FD+SNPIR+VS DGLR+ E SV Q++GQ+RH LSFARF  RYGK Y++VEEMKLRF+ F +NLDLIRSTN+KGLSY+LG+N+FAD +W+EFQR +LGAAQNCSAT KG+HK+T   LPETKDWRE GIVSPVKDQG CGSCWTFSTTG+LEAAY
Sbjct:   26 FDESNPIRMVS-DGLREVEESVSQILGQSRHVLSFARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCSATLKGSHKVTEAALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAY 178          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.502e-63
Identity = 110/154 (71.43%), Postives = 136/154 (88.31%), Query Frame = 1
Query:  235 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAY 696
            FD+SNPI++VS D L + E +V+Q++GQ+RH LSF+RF  RYGK Y+SVEEMKLRF+ F +NLDLIRSTN+KGLSY+L LN+FAD +W+EFQR++LGAAQNCSAT KG+HK+T   +P+TKDWRE GIVSPVK+QGHCGSCWTFSTTG+LEAAY
Sbjct:   26 FDESNPIKMVS-DNLHELEDTVVQILGQSRHVLSFSRFTHRYGKKYQSVEEMKLRFSVFKENLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRYKLGAAQNCSATLKGSHKITEATVPDTKDWREDGIVSPVKEQGHCGSCWTFSTTGALEAAY 178          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.053e-56
Identity = 105/156 (67.31%), Postives = 123/156 (78.85%), Query Frame = 1
Query:  235 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKL-TADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYT 699
            FDDSNPIR V+       E++V+  +G+ R AL FARFA R+GK Y    E++ RF  FS++L+L+RSTNR+GL YRLG+N+FAD SWEEFQ  RLGAAQNCSAT  GNH++  A  LPETKDWRE GIVSPVKDQGHCGSCWTFSTTGSLEAAYT
Sbjct:   28 FDDSNPIRSVTDHAASALESTVIAALGRTRDALRFARFAVRHGKRYGDAAEVQRRFRIFSESLELVRSTNRRGLPYRLGINRFADMSWEEFQASRLGAAQNCSATLAGNHRMRDAAALPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYT 183          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.920e-55
Identity = 106/157 (67.52%), Postives = 122/157 (77.71%), Query Frame = 1
Query:  235 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKL--TADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYT 699
            F DSNPIR V+       E++V   +G+ R AL FARFA RYGK YES  E+  RF  FS++L L+RSTNRKGLSYRLG+N+FAD SWEEF+  RLGAAQNCSAT  GNH++   A  LPETKDWRE GIVSPVK+QGHCGSCWTFSTTG+LEAAYT
Sbjct:   25 FADSNPIRPVTDRAASALESTVFAALGRTRDALRFARFAVRYGKSYESAAEVHKRFRIFSESLQLVRSTNRKGLSYRLGINRFADMSWEEFRATRLGAAQNCSATLTGNHRMRAAAVALPETKDWREDGIVSPVKNQGHCGSCWTFSTTGALEAAYT 181          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.626e-54
Identity = 104/156 (66.67%), Postives = 121/156 (77.56%), Query Frame = 1
Query:  235 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKL-TADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYT 699
            F DSNPIR V+       E++VL  +G+ RHAL FARFA RYGK YES  E++ RF  FS++L+ +RSTNRKGL YRLG+N+F+D SWEEFQ  RLGAAQ CSAT  GNH +  A  LPETKDWRE GIVSPVK+Q HCGSCWTFSTTG+LEAAYT
Sbjct:   27 FADSNPIRPVTDRAASTLESAVLGALGRTRHALRFARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATLAGNHLMRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYT 182          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.068e-54
Identity = 104/154 (67.53%), Postives = 122/154 (79.22%), Query Frame = 1
Query:  235 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAY 696
            F D NPIR V      + E  +LQV+GQ R ALSFARFA R+ K Y+SVEE+K RF  F  NL +IRS NRKGLSY+LG+N+F D +W+EF++H+LGA+QNCSATTKGN KLT  VLPETKDWR+ GIVSPVK QG CGSCWTFSTTG+LEAAY
Sbjct:   25 FADKNPIRQVVFPD--ELENGILQVVGQTRSALSFARFAIRHRKRYDSVEEIKQRFEIFLDNLKMIRSHNRKGLSYKLGINEFTDLTWDEFRKHKLGASQNCSATTKGNLKLTNVVLPETKDWRKDGIVSPVKAQGKCGSCWTFSTTGALEAAY 176          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.814e-21
Identity = 57/135 (42.22%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  301 LQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGA-----AQNCSATTKGNHKLTAD-VLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 687
            L  +  A  +L F  +  ++GK+Y SV E + R   F  NL  I + N + LSYRLGL  FAD S  E++    GA       +   T+   +K +AD VLP++ DWR  G V+ VKDQGHC SCW FST G++E
Sbjct:   37 LHSVFDAEASLIFESWMVKHGKVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSSDRYKTSADDVLPKSVDWRNEGAVTEVKDQGHCRSCWAFSTVGAVE 171          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 59/134 (44.03%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  304 QVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGA----AQNCSATTKGNHKLTA--DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 687
            Q I  A   L F  +  ++GK+Y+SV E + R   F  NL  I + N + LSYRLGLN+FAD S  E+     GA     +N    T  N   T+  DVLP++ DWR  G V+ VKDQG C SCW FST G++E
Sbjct:   45 QGIFDAEATLMFESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFADLSLHEYGEICHGADPRPPRNHVFMTSSNRYKTSDGDVLPKSVDWRNEGAVTEVKDQGLCRSCWAFSTVGAVE 178          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  262 VSSDGLRDFETSVL-QVIGQARHAL-----SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHK--LTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAA 693
            VSS  + D +  V+ QV+G A   +      F+ F R++GK+Y S EE   RF+ F  NL   R   +   S   G+ +F+D +  EF++  LG           N    L  + LPE  DWR+ G V+PVK+QG CGSCW+FS TG+LE A
Sbjct:   20 VSSSDVNDGDDLVIRQVVGGAEPQVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGA 171          
BLAST of FC930050 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.421e-20
Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  337 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNRKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKL-----TADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 687
            F  +   + K YE+VEE  LRF  F  NL  I  TN+KG SY LGLN+FAD S EEF++  LG   +     +            + +P++ DWR+ G V+ VK+QG CGSCW FST  ++E
Sbjct:   51 FENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHEEFKKMYLGLKTDIVRRDEERSYAEFAYRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVE 172          
The following BLAST results are available for this feature:
BLAST of FC930050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
ALEU_ARATH1.733e-6475.32Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ALEUL_ARATH2.502e-6371.43Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
ORYC_ORYSJ5.053e-5667.31Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP2_MAIZE1.920e-5567.52Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ALEU_HORVU1.626e-5466.67Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CYSP3_SOLLC8.068e-5467.53Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CPR3_ARATH1.814e-2142.22Probable cysteine proteinase At4g11310 OS=Arabidop... [more]
CPR4_ARATH2.369e-2144.03Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
RD19A_ARATH1.536e-2038.82Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
XCP2_ARATH3.421e-2042.62Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC34003C04EF PostHarvC1 Citrus clementina cDNA clone C34003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930050 ID=FC930050; Name=FC930050; organism=Citrus clementina; type=EST; length=699bp
GATGATACGGAATCTTGAGTCTCGACTTATCTTACACCCGACGAGGCATC
TCATAATAATAATAACAATAATAATAGTGTTCATAGACTGCATTCATTTA
ATCCGAAGCCCTTGAGTGCGGTGCACTCTCTCCAAACAAAACAGACACAA
TCATTAGGCATGGCTCGCCCTGAACATTTGGTCTCGTCCATCATCTTGTT
GCTTTGCTGCGCTGCCGCAGCATCAGCATCAAGCTTCGACGACTCCAATC
CGATCAGATTGGTATCATCGGACGGTCTCCGTGACTTCGAGACCTCCGTC
CTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCCCGTTTTGC
TCGCAGGTATGGAAAGATTTACGAGTCCGTTGAGGAGATGAAGCTCCGGT
TCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACGAATCGTAAA
GGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGATTGGAGCTGGGA
AGAGTTCCAAAGGCACAGGTTGGGAGCTGCACAAAACTGCTCTGCCACTA
CAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAAGAC
TGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGTCACTGTGG
ATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCTTACACC
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