FC930053

Overview
NameFC930053
Unique NameFC930053
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930053_ssr135 microsatellite FC930053_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930053_ssr181 microsatellite FC930053_ssr181:181..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11566 contig Ccv1_Contig11566:26..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 6.783e-88
Identity = 159/228 (69.74%), Postives = 183/228 (80.26%), Query Frame = 3
Query:   39 MAARRIPLLLSRSFTSSSPTLFS-RGRDSSLCRXXXXXXXXXXXXXXXXXXXXXEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            MA+RR+  LLSRSF SSS ++FS RG +    R                     E+ ITPPVKV++TQLLI G+FVD+ SGKTFPTLDPR G+VI  V+EG+AEDVNRAV+AARKAFDEGPWP+MTAYERSKI+ RFADL+E+HNDEIAALETWDNGKP+EQSAQ EVPM  R+FRYYAGWADKI G+T P DGP+HVQTLHEPIGVAGQIIPWNFPLLM +WK+GPA
Sbjct:    1 MASRRVSSLLSRSFMSSSRSIFSLRGMNRGAQRYSNLAAAV-------------ENTITPPVKVEHTQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSKILFRFADLIEKHNDEIAALETWDNGKPYEQSAQIEVPMLARVFRYYAGWADKIHGMTMPGDGPHHVQTLHEPIGVAGQIIPWNFPLLMLSWKLGPA 215          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.412e-85
Identity = 155/228 (67.98%), Postives = 180/228 (78.95%), Query Frame = 3
Query:   39 MAARRIPLLLSRSFTSSSPTLF-SRGRDSSLCRXXXXXXXXXXXXXXXXXXXXXEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            MAARR+  LLSRSF++SSP LF S+GR+                          E+ I P V+V +TQLLING FVDSASGKTFPTLDPRTG+VI HVAEG+AED+NRAV AAR AFDEGPWP+M+AYERS+++LRFADL+E+H++E+A+LETWDNGKP++QS   E+PM  RLFRYYAGWADKI GLT PADG Y V TLHEPIGVAGQIIPWNFPLLMFAWKVGPA
Sbjct:    1 MAARRVSSLLSRSFSASSPLLFRSQGRNC---------YNGGILRRFGTSSAAAEEIINPSVQVSHTQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGPWPKMSAYERSRVLLRFADLVEKHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYAGWADKIHGLTIPADGNYQVHTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 219          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.291e-50
Identity = 96/167 (57.49%), Postives = 119/167 (71.26%), Query Frame = 3
Query:  222 KVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            ++ Y Q+ IN ++ D+ S KTFPT++P TGDVI HVAEG+ EDV+RAV AAR AF  G PW R+ A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG Y   T HEP+GV GQIIPWNFPLLM AWK+GPA
Sbjct:   37 EIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDVDRAVEAARAAFQLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTLPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPA 203          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.291e-50
Identity = 98/167 (58.68%), Postives = 118/167 (70.66%), Query Frame = 3
Query:  222 KVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            +V Y Q+ IN ++ D+ S KTFPT++P TGDVI HVAEG+  DV+RAV AAR AF  G PW RM A ER +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG Y   T HEP+GV GQIIPWNFPLLM AWK+GPA
Sbjct:   36 EVLYNQIFINNEWHDAVSKKTFPTVNPSTGDVICHVAEGDKADVDRAVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYIISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPA 202          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.529e-47
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG  EDV++AV AAR AF  G PW RM A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNFPLLM AWK+GPA
Sbjct:   40 QIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAARAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPA 201          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.608e-47
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG+ EDV++AV AAR AF  G PW RM A  R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNFPLLM AWK+GPA
Sbjct:   38 QIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPA 199          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.608e-47
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG  EDV++AV AAR AF  G PW RM A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNFPLLM AWK+GPA
Sbjct:   21 QIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGSKEDVDKAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPA 182          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.608e-47
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 3
Query:  237 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG+ EDV++AV AAR AF  G PW RM A  R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNFPLLM AWK+GPA
Sbjct:   38 QIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPA 199          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 94/173 (54.34%), Postives = 121/173 (69.94%), Query Frame = 3
Query:  204 PITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            PI  P  + Y QL IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+RAV AAR+AF  G PW RM A ER +++   ADL+ER    +A+LET DNGKPF++S   ++    +++RY+AGWADK  G T P DG +   T HEPIGV GQIIPWNFPL+M  WK+ PA
Sbjct:   28 PILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPIGVCGQIIPWNFPLVMQGWKLAPA 199          
BLAST of FC930053 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 93/173 (53.76%), Postives = 121/173 (69.94%), Query Frame = 3
Query:  204 PITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRMTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPA 719
            PI  P  + Y QL IN ++ D+ S KTFPT++P TG+VI HVAEG+  DV+RAV AAR+AF  G PW RM A ER +++   ADL+ER    +A+LET DNGKPF++S   ++    +++RY+AGWADK  G T P DG +   T HEP+GV GQIIPWNFPL+M  WK+ PA
Sbjct:   28 PILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNLLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPA 199          
The following BLAST results are available for this feature:
BLAST of FC930053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
AL2B7_ARATH6.783e-8869.74Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL2B4_ARATH2.412e-8567.98Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
ALDH2_PIG3.291e-5057.49Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
ALDH2_BOVIN3.291e-5058.68Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
ALDH2_MOUSE1.529e-4756.79Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]
ALDH2_PONAB2.608e-4756.79Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH2_MESAU2.608e-4756.79Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_HUMAN2.608e-4756.79Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
AL1B1_PONAB3.406e-4754.34Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_HUMAN3.406e-4753.76Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC34003C07EF PostHarvC1 Citrus clementina cDNA clone C34003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930053 ID=FC930053; Name=FC930053; organism=Citrus clementina; type=EST; length=720bp
AGGGAGGAAAAAAAAAAAAAGATTTCCTTAAAGTTGTGATGGCTGCAAGA
AGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTTCTTCACCTACTCT
GTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCTGCTGCTGCTGCTG
CCGCCTCCTGCGGATACAGCACGGCTTCTTCTGCTGCTGCTGCTGCTGAA
GATCCAATTACTCCGCCTGTTAAAGTTGATTATACTCAGCTTCTAATTAA
TGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTTCCCACATTAGACC
CCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGGTGAGGCTGAAGAC
GTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTGATGAAGGACCGTG
GCCTAGGATGACTGCTTATGAAAGGTCAAAAATAATTTTGCGCTTCGCTG
ATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCTTGAGACTTGGGAT
AACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAGTACCAATGACCAC
GCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAGATTCAGGGTCTCA
CTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTTGCACGAACCAATT
GGTGTAGCAGGTCAAATTATCCCATGGAACTTTCCCCTTCTCATGTTTGC
TTGGAAAGTTGGGCCTGCAT
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