FC930061

Overview
NameFC930061
Unique NameFC930061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CYSP_SCHJA (Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 67/197 (34.01%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  108 VISSQTFAEG-VVSKLKLDSHILQDSTIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN-XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTP 686
            ++S  TF E  V ++       L D  I  +NE+P AGWKA ++ +F  +++   + L+G +     +       V  HD ++++P  FD+R  WP C +IS+I DQ  CGSCWAFGAVEA++DR CI  G   S  ++                  +P  AW Y+V  G+VT         +  +H GC+P YP P
Sbjct:    8 IVSLFTFLEAHVTTRNNQRIEPLSDEMISFINEHPDAGWKADKSDRF--HSLDDARILMGARKEDAEMKRNRRPTVDHHDLNVEIPSQFDSRKKWPHCKSISQIRDQSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALDLISCCKDCGDGCQGGFPGVAWDYWVKRGIVT-------GGSKENHTGCQP-YPFP 194          
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 74/200 (37.00%), Postives = 90/200 (45.00%), Query Frame = 3
Query:   90 CLLILGVISSQTFAEGVVSKLKLDSHILQDSTIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEP 671
            CLL LG   S+              H L D  +  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+      +D    SH GC P
Sbjct:   10 CLLALGDARSRP-----------SFHPLSDELVNYVNKQ-NTTWQAGHN--FYNVDVSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLVS---GGLYD----SHVGCRP 181          
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 69/177 (38.98%), Postives = 83/177 (46.89%), Query Frame = 3
Query:  165 HILQDSTIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGC---SHPGCE 668
            H L D  +  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+     Y    GC   S P CE
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDVSYLKKLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGL--YESHVGCRPYSIPPCE 188          
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 71/201 (35.32%), Postives = 102/201 (50.75%), Query Frame = 3
Query:   99 ILGVISSQTFAEGVVSKLKLDSHILQDSTIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLS-VNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTP 686
            IL + S  TF E  +S        L D  I  +NE+P AGW+A ++ +F  +++   +  +G +     L       V  +D ++++P +FD+R  WP C +I+ I DQ  CGSCW+FGAVEA+SDR CI  G   N+ LS V+                  P  AW Y+V  G+VT        S+  +H GCEP YP P
Sbjct:    5 ILCIASLITFLEAHISVKNEKFEPLSDDIISYINEHPNAGWRAEKSNRF--HSLDDARIQMGARREEPDLRRKRRPTVDHNDWNVEIPSNFDSRKKWPGCKSIATIRDQSRCGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVDLLTCCESCGLGCEGGILGP--AWDYWVKEGIVTA-------SSKENHTGCEP-YPFP 193          
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 68/177 (38.42%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  165 HILQDSTIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGC---SHPGCE 668
            H L D  +  VN+     W+A  N  F N  +   K L G         LG P         + LKLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+     Y    GC   S P CE
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGL--YESHVGCRPYSIPPCE 188          
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 65/179 (36.31%), Postives = 83/179 (46.37%), Query Frame = 3
Query:  153 KLDSHILQDSTIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEP 671
            K  SH L D  I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP+SFDAR  W  C TI++I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   YP  AW ++   G+V+            SH GC P
Sbjct:   20 KPSSHPLSDDMINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPNLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVS-------GGVYNSHIGCLP 181          
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 74/224 (33.04%), Postives = 105/224 (46.88%), Query Frame = 3
Query:   75 LFLTTCLLILGVISSQTFAEGVVSKLK---LDSHILQ---DSTIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVP------------VKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTP 686
            L   +C+++    +     E V+ K +   +DS   +   D  I  VNEN    W A +  +FS+        + G     K  L+GV              KT D  L +P+SFD+R  WP+C +I  I DQ  CGSCWAFGAVEA+SDR CI  H  + ++LS +                  P++AWRY+V  G+VT        S   ++ GC+P YP P
Sbjct:    4 LLFLSCIVVAAYCACNDNLESVLDKYRNREIDSEAAELDGDDLIDYVNENQNL-WTAKKQRRFSS--------VYGENDKAKWGLMGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLLSCCKSCGFGCNGGD-PLAAWRYWVKDGIVT-------GSNYTANNGCKP-YPFP 209          
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CTSB_DICDI (Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 59/153 (38.56%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  219 WKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK-SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPA 674
            W   +  QF N  VGQ   LLG K +P    L   +K++D   +++P SF+A++ WP C+TIS+I +Q  CGSCWAFGA E+ +DR CIH   N+ LS                   +  SAW +    G V+EEC PY      + P C PA
Sbjct:   39 WVEEQTDQFDNIKVGQ---LLGFKRSPNRPKL--QIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAF--SAWNWLRKQGAVSEECLPY------TIPTCPPA 178          
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 71/205 (34.63%), Postives = 90/205 (43.90%), Query Frame = 3
Query:   75 LFLTTCLLILGVISSQTFAEGVVSKLKLDSHILQDSTIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVK----THDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEP 671
            L L +CLL L      T A       K   H L D  I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP++FDAR  W  C TI +I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   YP  AW ++   G+V+            SH GC P
Sbjct:    5 LILLSCLLAL------TSAHD-----KPSFHPLSDDLINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPKLPGRVAFGEDIDLPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLVS-------GGVYNSHVGCLP 181          
BLAST of FC930061 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 64/174 (36.78%), Postives = 80/174 (45.98%), Query Frame = 3
Query:  171 LQDSTIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK---SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGC---SHPGCE 668
            L D  +  VN+     WKA  N  F N  +   K L G       +L G  +   D     + LP+SFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   +P  AW ++   G+V+     Y    GC   S P CE
Sbjct:   26 LSDELVNFVNKQ-NTTWKAGHN--FYNVDLSYVKKLCGA------ILGGPKLPQRDAFAADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGL--YNSHVGCRPYSIPPCE 188          
The following BLAST results are available for this feature:
BLAST of FC930061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CYSP_SCHJA8.845e-2434.01Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CATB_MACFA7.488e-2337.00Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_PONAB2.179e-2238.98Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CYSP_SCHMA2.845e-2235.32Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CATB_HUMAN6.339e-2238.42Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_RAT3.146e-2136.31Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CPR6_CAEEL4.109e-2133.04Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CTSB_DICDI1.195e-2038.56Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE... [more]
CATB_MOUSE1.012e-1934.63Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_BOVIN1.322e-1936.78Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003D04EF PostHarvC1 Citrus clementina cDNA clone C34003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930061 ID=FC930061; Name=FC930061; organism=Citrus clementina; type=EST; length=709bp
GACAAGAAAAGTGCTCTCTCCCATTTCTCCTCTCTTCGTCCTTCCCGAGC
CAGTCATCCATGGCTTCATCTCACCTCTTTCTTACTACATGTTTGTTAAT
TCTTGGCGTTATCTCCTCCCAGACTTTTGCAGAGGGAGTGGTTTCCAAGC
TCAAGCTTGATTCTCATATTCTCCAGGATTCAACCATCAAAGAAGTGAAT
GAGAACCCTAAGGCTGGATGGAAAGCTGCCAGAAATCCTCAATTTTCCAA
TTACACTGTTGGGCAATTTAAGCACCTTCTTGGAGTCAAGCCAACACCTA
AAGGGCTGCTCTTGGGTGTCCCTGTTAAAACTCATGACAAATCCTTGAAG
TTGCCTAAAAGCTTTGATGCAAGGTCCGCTTGGCCACAATGCAGCACCAT
TAGTAGGATCCTAGATCAGGGCCATTGTGGTTCTTGTTGGGCTTTTGGTG
CTGTTGAAGCGCTATCTGATCGTTTCTGCATCCATTTTGGCATGAACCTA
TCTCTATCAGTTAATGATCTTTTAGCCTGCTGTGGCTTTTTGTGTGGAGA
TGGTTGTGACGGGGGTTATCCAATTTCTGCATGGCGATACTTTGTCCACC
ATGGTGTTGTTACCGAAGAGTGTGATCCCTACTTTGATAGTACTGGCTGT
TCCCACCCTGGTTGTGAGCCGGCATATCCTACTCCAAGTGTGTGAGGAGT
GCGTCAGAA
back to top