FC930113

Overview
NameFC930113
Unique NameFC930113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930113 vs. ExPASy Swiss-Prot
Match: BSL1_ARATH (Serine/threonine-protein phosphatase BSL1 OS=Arabidopsis thaliana GN=BSL1 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.568e-70
Identity = 120/146 (82.19%), Postives = 131/146 (89.73%), Query Frame = 1
Query:  217 MNAKPWLHPAPSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRXXXXXXXVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ 654
            M +KPWLHPAP Y+TLET+WD ++DAPGPRC HTLTAVAATKT GPRLILFGGATAIEGG+ SS PGIRLAGVTN+VH YD+LTRKWTR++PAGEPPSPR       VGTMVVFQGGIGPAGHSTDDLYVLD+TNDKFKWHRVVVQ
Sbjct:    1 MGSKPWLHPAPQYKTLETFWDDEDDAPGPRCAHTLTAVAATKTHGPRLILFGGATAIEGGS-SSVPGIRLAGVTNTVHSYDILTRKWTRLKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDMTNDKFKWHRVVVQ 145          

HSP 2 Score: 29.6462 bits (65), Expect = 1.568e-70
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  681 HVMDLVSQRYLVSV 722
            HVMDLVSQRYLV+V
Sbjct:  155 HVMDLVSQRYLVTV 168          
BLAST of FC930113 vs. ExPASy Swiss-Prot
Match: BSL1_ORYSJ (Serine/threonine-protein phosphatase BSL1 homolog OS=Oryza sativa subsp. japonica GN=BSL1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 2.586e-58
Identity = 106/141 (75.18%), Postives = 116/141 (82.27%), Query Frame = 1
Query:  232 WLHPAPSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRXXXXXXXVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ 654
            W+ PAP+YR +E +    +D+PG RCGH+LT VA TK  GPRLILFGGATAIE GA+S  PGIRLAGVTNSVH YDV TR+WTR+ PAGEPPSPR       VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ
Sbjct:    9 WVVPAPAYREVEGWEGAGDDSPGFRCGHSLTVVAPTKGHGPRLILFGGATAIEAGASSGMPGIRLAGVTNSVHSYDVDTRRWTRLHPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ 149          

HSP 2 Score: 26.5646 bits (57), Expect = 2.586e-58
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  681 HVMDLVSQRYLVSV 722
            H MDLV+QRYLV+V
Sbjct:  159 HCMDLVAQRYLVTV 172          
BLAST of FC930113 vs. ExPASy Swiss-Prot
Match: BSL2_ARATH (Serine/threonine-protein phosphatase BSL2 OS=Arabidopsis thaliana GN=BSL2 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.635e-41
Identity = 85/150 (56.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query:  244 APSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTG------PRLILFGGATAIEGGA-------TSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRXXXXXXXVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ 654
            AP+Y  ++   D  ED PGPRCGHTLTAV A    G      PRL+LFGGATA+EG +       ++ + GIRLAG T  VH YDVL+ KWTR+ P GEPP+PR       VGTMVV QGGIGPAG S +DL+VLDLT  + +WHRVVVQ
Sbjct:   85 APTYSVVDAMMDKKEDGPGPRCGHTLTAVPAVGDEGTPGYIGPRLVLFGGATALEGNSGGTGTPTSAGSAGIRLAGATADVHCYDVLSNKWTRLTPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ 234          

HSP 2 Score: 23.483 bits (49), Expect = 1.635e-41
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  681 HVMDLVSQRYLVSV 722
            HVM LV QRYL+++
Sbjct:  244 HVMALVGQRYLMAI 257          
BLAST of FC930113 vs. ExPASy Swiss-Prot
Match: BSL3_ARATH (Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 8.000e-41
Identity = 85/150 (56.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query:  244 APSYRTLETYWDTDEDAPGPRCGHTLTAVAA------TKTTGPRLILFGGATAIEGGA-------TSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRXXXXXXXVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ 654
            AP+Y  +    +  ED PGPRCGHTLTAV A      +   GPRLILFGGATA+EG +       ++ + GIRLAG T  VH YDVL+ KW+R+ P GEPPSPR       VGTMVV QGGIGPAG S +DL+VLDLT  + +WHRVVVQ
Sbjct:   74 APTYSVVNAIIEKKEDGPGPRCGHTLTAVPAVGEEGTSSYIGPRLILFGGATALEGNSGGTGTPTSAGSAGIRLAGATADVHCYDVLSNKWSRLTPYGEPPSPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ 223          

HSP 2 Score: 23.483 bits (49), Expect = 8.000e-41
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  681 HVMDLVSQRYLVSV 722
            HVM LV QRYL+++
Sbjct:  233 HVMALVGQRYLMAI 246          
BLAST of FC930113 vs. ExPASy Swiss-Prot
Match: BSL2_ORYSJ (Serine/threonine-protein phosphatase BSL2 homolog OS=Oryza sativa subsp. japonica GN=BSL2 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.128e-39
Identity = 84/149 (56.38%), Postives = 98/149 (65.77%), Query Frame = 1
Query:  241 PAPSYRTLETYWDTDEDAPGPRCGHTLTAVAATKT------TGPRLILFGGATAIEGGA-----TSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRXXXXXXXVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ 654
            PAP Y  +    +  ED PG RCGHTLTAV A          GPRLILFGGATA+EG +     ++ + GIRLAG T  VH YDV + KW+R+ P GEPPSPR       VGTMVV QGGIGPAG S +DL+VLDLT  + +WHRVVVQ
Sbjct:   73 PAPGYTVVNAAMEKKEDGPGCRCGHTLTAVPAVGEEGAPGYVGPRLILFGGATALEGNSATPPSSAGSAGIRLAGATADVHCYDVSSNKWSRLTPVGEPPSPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVVVQ 221          

HSP 2 Score: 21.9422 bits (45), Expect = 1.128e-39
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  681 HVMDLVSQRYLVSV 722
            HVM LV QR+L+++
Sbjct:  231 HVMALVGQRFLLTI 244          
BLAST of FC930113 vs. ExPASy Swiss-Prot
Match: BSU1_ARATH (Serine/threonine-protein phosphatase BSU1 OS=Arabidopsis thaliana GN=BSU1 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.721e-37
Identity = 73/131 (55.73%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  238 HPAPSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRXXXXXXXVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKF 630
            +P+PSY +++T++DTDED PGPRCGHTLTAV    +   +LILFGG+T       SS P I L GVTNSVH +DVLTRKWTR+ P G+ PSPR        GT+++ QGGIGP+G S  D+Y+LD+TN+K+
Sbjct:    9 YPSPSYESIQTFYDTDEDWPGPRCGHTLTAVFVNNSH--QLILFGGSTTAVANHNSSLPEISLDGVTNSVHSFDVLTRKWTRLNPIGDVPSPRACHAAALYGTLILIQGGIGPSGPSDGDVYMLDMTNNKW 137          

HSP 2 Score: 22.3274 bits (46), Expect = 1.721e-37
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  681 HVMDLVSQRYLV 716
            HVMD+ +QR+LV
Sbjct:  153 HVMDIAAQRWLV 164          
The following BLAST results are available for this feature:
BLAST of FC930113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BSL1_ARATH1.568e-7082.19Serine/threonine-protein phosphatase BSL1 OS=Arabi... [more]
BSL1_ORYSJ2.586e-5875.18Serine/threonine-protein phosphatase BSL1 homolog ... [more]
BSL2_ARATH1.635e-4156.67Serine/threonine-protein phosphatase BSL2 OS=Arabi... [more]
BSL3_ARATH8.000e-4156.67Serine/threonine-protein phosphatase BSL3 OS=Arabi... [more]
BSL2_ORYSJ1.128e-3956.38Serine/threonine-protein phosphatase BSL2 homolog ... [more]
BSU1_ARATH1.721e-3755.73Serine/threonine-protein phosphatase BSU1 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC34003H09EF PostHarvC1 Citrus clementina cDNA clone C34003H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930113 ID=FC930113; Name=FC930113; organism=Citrus clementina; type=EST; length=724bp
GAAATTTAAAAATTTGATTGAATTTATAAATTAAAAGAATTTATAGGGGA
AAAAAAGGAAATATATATATCTTGAGGGTCCGGAGACTTTGTCCGGGCCC
ACCACCAGCGCCGCCACCACTAGCATTAGTTCGTTGTCCGGGATTCCGAT
TTTTAGGGTTTAATTTTGAAGATCGTTGATTTGTTATATATATTTGAATT
GAATTTCAGTGACTCCATGAACGCGAAGCCGTGGCTTCACCCTGCTCCGT
CTTATCGGACCTTGGAGACGTATTGGGACACGGATGAGGATGCGCCTGGT
CCACGATGCGGTCACACTCTCACTGCCGTTGCCGCCACCAAGACCACCGG
TCCTCGTCTCATCCTCTTTGGAGGTGCCACCGCTATTGAGGGCGGTGCCA
CGTCATCTGCTCCCGGCATCAGGCTGGCTGGAGTGACGAATTCAGTACAT
TTGTATGATGTTCTCACTAGAAAATGGACCAGAATTAGACCTGCTGGTGA
GCCACCATCTCCTAGGGCTGCACACGCAGCTGCTGCTGTTGGTACCATGG
TGGTTTTTCAGGGTGGCATAGGTCCTGCTGGGCATTCAACTGATGATCTT
TATGTGCTTGACTTGACCAATGACAAATTCAAGTGGCACAGAGTGGTGGT
ACAGGACAGGGTCCAGGGCCTCGCTATGGCCATGTAATGGATTTGGTCAG
TCAGAGATATCTTGTCTCTGTCAG
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