FC930118

Overview
NameFC930118
Unique NameFC930118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930118 vs. ExPASy Swiss-Prot
Match: IPO4_HUMAN (Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 62/240 (25.83%), Postives = 110/240 (45.83%), Query Frame = 3
Query:    3 SIVEIISDYGYMAVEP--YMSRLVDATLLLLREESTCQQPXXXXXXXXXXXXXXXEVIMDAVSDLLPAFAKSMGLH-FAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIXXXXXXXXXXXXXXXREDFEESMAVYNCISTLVLSS 713
            ++  ++   G + ++P   ++ L      +L+ ++ CQ                  ++++   + +PA A + G   FAP FA     L+   K    + +++  V TLAE  + +G+  A +V R++P++L      D   R NA F +G L ++GG  A +++  +L  L+PL    E  D VRDN  GA+AR++M +P                  +ED EE + +    S L  SS
Sbjct:  774 ALTGVLRSCGTLTLKPPGRLAELCGVLKAVLQRKTACQDTDEEEEEEDDDQAEYDAMLLEHAGEAIPALAAAAGGDSFAPFFAGFLPLLVCKTKQGCTVAEKSFAVGTLAETIQGLGAASAQFVSRLLPVLLSTAQEADPEVRSNAIFGMGVLAEHGGHPAQEHFPKLLGLLFPLLA-RERHDRVRDNICGALARLLMASPTRKPEPQVLAALLHALPLKEDLEEWVTIGRLFSFLYQSS 1012          
BLAST of FC930118 vs. ExPASy Swiss-Prot
Match: IPO4_MOUSE (Importin-4 OS=Mus musculus GN=Ipo4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 64/236 (27.12%), Postives = 110/236 (46.61%), Query Frame = 3
Query:    3 SIVEIISDYGYMAVEP--YMSRLVDATLLLLREESTCQQPXXXXXXXXXXXXXXXEVIMDAVSDLLPAFAKSMGLH-FAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIXXXXXXXXXXXXXXXREDFEESMAVYNCISTL 701
            S+  ++   G +A++P   +S L +    +L++++ CQ                  ++++   + +P  A + G H FAP FA     L+   K S  + +++  V TLAE  + +G+  A +V R+ P++L      D   R NA F +G L ++GG  A  ++  +L  L PL    E  D VRDN  GA+AR++M +P                  +ED EE + + +  S L
Sbjct:  776 SLTGVLRTCGSLALQPPGRLSELCNVLKAVLQKKTACQDAEEDDDEDDDQAEYDA-MLLEHAGEAIPVLAATAGGHAFAPFFATFLPLLLCKTKQSCTVAEKSFAVGTLAESIQGLGTASAQFVSRLFPVLLNNAREADPEVRSNAIFGLGVLAEHGGCPAQDHFPKLLGLLLPLLA-RERHDRVRDNICGALARVLMASPVGKTEPQVLATLLRALPLKEDMEEWLTIGHLFSFL 1009          
BLAST of FC930118 vs. ExPASy Swiss-Prot
Match: IMB4_SCHPO (Probable importin subunit beta-4 OS=Schizosaccharomyces pombe GN=kap123 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 52/184 (28.26%), Postives = 85/184 (46.20%), Query Frame = 3
Query:  165 VIMDAVSDLLPAFAKSMGLHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIXXXXXXXXXXXXXXXREDFEESMAVYNCISTLVLSSN 716
            +++D+  D++ A A ++G  FA  F   +  ++K+  S     +R M VA + EVA  + S I  +   V  L +  L   +   R NAA+ +G LC+   E     Y +IL+ L P F   E      DNA G ++R+I+ N  +I               +ED+ E+  +Y+ I  L    N
Sbjct:  827 LLIDSACDVVIALAVALGGSFADSFKVFYPQIVKYYMSKNG-NERAMAVACVGEVAGGIESAITPFTRDVFSLFMAALEDSEGEVRSNAAYSMGLLCQFSTEDLSSEYLNILQKLQPFF-TQEVFRTALDNAIGCISRLILHNQNAIPVDQVLPIVFSKLPLKEDYLENAPLYHMILALYRQQN 1008          
The following BLAST results are available for this feature:
BLAST of FC930118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
IPO4_HUMAN9.587e-1825.83Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2[more]
IPO4_MOUSE2.789e-1727.12Importin-4 OS=Mus musculus GN=Ipo4 PE=1 SV=1[more]
IMB4_SCHPO9.286e-1328.26Probable importin subunit beta-4 OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionC34004A02EF PostHarvC1 Citrus clementina cDNA clone C34004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930118 ID=FC930118; Name=FC930118; organism=Citrus clementina; type=EST; length=718bp
CTAGCATTGTTGAGATCATCTCTGATTATGGCTACATGGCTGTTGAGCCT
TATATGTCTCGACTGGTTGATGCAACCCTGCTACTGCTCCGAGAGGAGTC
AACTTGTCAGCAGCCAGATAATGACAGTGATATTGAAGATGACGACGACA
CTGCACATGATGAAGTTATAATGGATGCAGTTTCTGACCTTCTTCCTGCA
TTTGCTAAGTCCATGGGTCTTCACTTTGCACCTATCTTTGCGAAGCTATT
TGACCCTTTAATGAAATTTGCGAAATCTTCACGCCCTCTGCAAGACCGGA
CCATGGTGGTTGCAACTTTGGCTGAAGTTGCTCGGGACATGGGTTCGCCT
ATAGCTGCCTATGTTGATAGGGTGATGCCCCTAGTACTCAAAGAACTAGC
ATCACCTGACGCAATGAATAGGAGGAATGCAGCATTTTGTGTTGGAGAGT
TGTGCAAAAATGGGGGGGAGTCAGCTTTAAAATACTATGGTGATATTTTG
CGGGGTCTTTACCCATTATTTGGGGATTCTGAGCCTGATGATGCCGTCAG
GGATAATGCAGCTGGTGCTGTGGCAAGGATGATAATGGTCAACCCGCAGT
CCATCCCGTTGAATCAGGTCCTTCCTGTTCTTTTGAAAGTTCTTCCTCTT
AGAGAAGACTTTGAAGAATCAATGGCTGTTTATAATTGTATTTCCACTCT
GGTTTTGTCTTCAAATCC
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