FC930126

Overview
NameFC930126
Unique NameFC930126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.916e-35
Identity = 80/178 (44.94%), Postives = 112/178 (62.92%), Query Frame = 3
Query:  102 DQLPNFVASAK---GKPGFHYLISNALYLLLIPLFVIVLTYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQIASQTGKFSDETLDFKKKILERSGIGNMTYGPKSLMENPAENGNMEEARKETEGVIIGAVD 626
            + LPNF+ S +    K G+HYLISNALY+LL+PL    +  +L S   TI DL  ++N L F F                  +T Y  +RP+ V+L++FSCYKPDPS +CTRE+F+  + + G F+++ L F++KILERSG+G  TY P++L+  P  N  MEEARKE E V+ GA+D
Sbjct:   26 NNLPNFLLSVRLKYVKLGYHYLISNALYILLLPLLAATIA-NLSSF--TINDLSLLYNTLRFHF-----LSATLATALLISLSTAYFTTRPRRVFLLDFSCYKPDPSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVP-PNPCMEEARKEAETVMFGAID 194          

HSP 2 Score: 28.8758 bits (63), Expect = 8.916e-35
Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  632 LGKTGVKPKAIGILVV 679
            L KTGVKPK IGILVV
Sbjct:  197 LEKTGVKPKDIGILVV 212          
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.060e-32
Identity = 75/177 (42.37%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  108 LPNFVASAK---GKPGFHYLISNALYLLLIPLFVIVLTYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQIASQTGKFSDETLDFKKKILERSGIGNMTYGPKSLMENPAENGNMEEARKETEGVIIGAVDE 629
            LP+F  S K    K G+HYLI++ +YL L PL +++      ST S + DL  +W  L +   +                 TIY M+RP+ VYLVNFSC+KPD SR CT++ F+  +  TG F++E L+F++KIL+RSG+G  TY P++++  P  N  M+EARKE E V+ GA+DE
Sbjct:   17 LPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQ--ISTFS-VTDLRSLWEHLQYNLISVVVCSMLLVF-----LMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMDRSKLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNVP-PNPCMKEARKEAETVMFGAIDE 184          

HSP 2 Score: 25.0238 bits (53), Expect = 5.060e-32
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  632 LGKTGVKPKAIGILVV 679
            L KT V PK IGIL+V
Sbjct:  186 LAKTNVNPKDIGILIV 201          
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 8.575e-32
Identity = 73/177 (41.24%), Postives = 111/177 (62.71%), Query Frame = 3
Query:  105 QLPNFVASAK---GKPGFHYLISNALYLLLIPLFVIVLTYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQIASQTGKFSDETLDFKKKILERSGIGNMTYGPKSLMENPAENGNMEEARKETEGVIIGAVD 626
            +LPNF+ S +    K G+HYLISNA+Y+L++P+ ++  T   FS    + DL  ++N L  KF                  TT+Y  +RP+ ++L++F+CYKPD S +CTRE+F+  + + G F+++ L F++KILERSG+G  TY P++L+  P  N  M EARKE E V+ GA+D
Sbjct:   21 KLPNFLLSVRLKYVKLGYHYLISNAVYILILPVGLLAATSSSFS----LTDLTLLYNHL-LKFH---FLSSTLFAALLIFLTTLYFTTRPRRIFLLDFACYKPDSSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVP-PNPCMSEARKEAETVMFGAID 188          

HSP 2 Score: 26.9498 bits (58), Expect = 8.575e-32
Identity = 13/16 (81.25%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  632 LGKTGVKPKAIGILVV 679
            L KTGV PK IGILVV
Sbjct:  191 LEKTGVNPKDIGILVV 206          
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.146e-27
Identity = 70/179 (39.11%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  105 QLPNFVASAK---GKPGFHYLISNALYLLLIPLFVIVLTYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQIASQTGKFSDETLDFKKKILERSGIGNMTYGPKSLMENPAEN-GNMEEARKETEGVIIGAVDE 629
            +LP+F+ S      K G+HYLI++A+YL  IP+ V+V + ++ S         +IW +L + +D                   +Y MSRP++VYL++F+CYKP      T+E F+++A ++GKF +ETL FKK+IL+ SGIG+ TY P+S+  + +EN   M+E R+E   VI GA+DE
Sbjct:   38 RLPDFLQSVNLKYVKLGYHYLINHAVYLATIPVLVLVFSAEVGSLSRE-----EIWKKL-WDYD---LATVIGFFGVFVLTACVYFMSRPRSVYLIDFACYKPSDEHKVTKEEFIELARKSGKFDEETLGFKKRILQASGIGDETYVPRSI--SSSENITTMKEGREEASTVIFGALDE 205          

HSP 2 Score: 24.2534 bits (51), Expect = 1.146e-27
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  638 KTGVKPKAIGILVV 679
            KT VKPK +G+LVV
Sbjct:  209 KTRVKPKDVGVLVV 222          
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.459e-23
Identity = 66/181 (36.46%), Postives = 104/181 (57.46%), Query Frame = 3
Query:   96 QKDQLPNFVASAKGKP---GFHYLISNALYLLLIPLFVIVLTYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQIASQTGKFSDETLDFKKKILERSGIGNMTYGPKSLMENPAENGNMEEARKETEGVIIGAVDE 629
            ++ +LPNF+ S   K    G+HYLI++   L L+PL  +++T    S L+T  DL+QIW  L +                    +T+Y+MSRP++VYLV++SCY P  S     + F+  +     F++ +L+F++KILERSG+G  TY P++L   P     M  AR+E+E V+ GA+D+
Sbjct:   21 ERRKLPNFLQSVNMKYVKLGYHYLITHLFKLCLVPLMAVLVTE--ISRLTTD-DLYQIWLHLQYNL-----VAFIFLSALAIFGSTVYIMSRPRSVYLVDYSCYLPPESLQVKYQKFMDHSKLIEDFNESSLEFQRKILERSGLGEETYLPEALHCIP-PRPTMMAAREESEQVMFGALDK 192          
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.617e-22
Identity = 66/180 (36.67%), Postives = 96/180 (53.33%), Query Frame = 3
Query:   96 QKDQLPNFVASAK---GKPGFHYLISNALYLLLIPLFVIVLTYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQIASQTGKFSDETLDFKKKILERSGIGNMTYGPKSLMENPAENGNMEEARKETEGVIIGAVD 626
            Q   LP+F+ S      K G+HYLISN L L L PL V++    + ++     DL Q+W  L +   +                 T+Y+M+RP+ VYLV+FSCY P          F++ +  TG F D  L+F++KILERSG+G  TY P+++   P    +M  AR+E E V+ GA+D
Sbjct:   25 QTRMLPDFLQSVNLKYVKLGYHYLISNLLTLCLFPLAVVI---SVEASQMNPDDLKQLWIHLQYNLVSIIICSAILVFGL-----TVYVMTRPRPVYLVDFSCYLPPDHLKAPYARFMEHSRLTGDFDDSALEFQRKILERSGLGEDTYVPEAMHYVPPRI-SMAAAREEAEQVMFGALD 195          

HSP 2 Score: 23.8682 bits (50), Expect = 1.617e-22
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  641 TGVKPKAIGILVV 679
            T VKPK IGILVV
Sbjct:  201 TNVKPKDIGILVV 213          
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.049e-20
Identity = 60/186 (32.26%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  105 QLPNFVASAK---GKPGFHY---LISNALYLLLIPLFVIVL------TYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQIASQTGKFSDETLDFKKKILERSGIGNMTYGPKSLMENPAENGNMEEARKETEGVIIGAVD 626
            +LP+ + S K    K G H    + +   +L+++PL   VL      T+D FS         ++W+  + + D                  T+Y+ +R K VYLV+FSCYKP+  R  + +SFL +  + G F+D+T+ F+++I  R+G+G+ TY P+ +   P +  NM EAR E E V+ GA+D
Sbjct:   33 RLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFS---------ELWSNQAVQLDTATRLTCLVFLSFVL---TLYVANRSKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPPKL-NMSEARAEAEAVMFGALD 205          

HSP 2 Score: 25.0238 bits (53), Expect = 4.049e-20
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  638 KTGVKPKAIGILVV 679
            KTG+KP  +GIL+V
Sbjct:  210 KTGIKPAEVGILIV 223          
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 53/163 (32.52%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  138 KPGFHYLISNALYLLLIPLFVIVLTYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQIASQTGKFSDETLDFKKKILERSGIGNMTYGPKSLMENPAENGNMEEARKETEGVIIGAVD 626
            K G+HYLI++   L+ +PL  ++    +  +L ++  L   +N   F F                  + ++ MSRP+++YL+++SCY P  S+  + + F+  +S    FS+ +L+F++KIL RSG+G  TY P S+   P     M  AR+E E VI GA+D
Sbjct:   17 KLGYHYLITHFFKLMFLPLMAVLF---MNVSLLSLNHLQLYYNSTGFIF----------VITLAIVGSIVFFMSRPRSIYLLDYSCYLPPSSQKVSYQKFMNNSSLIQDFSETSLEFQRKILIRSGLGEETYLPDSIHSIP-PRPTMAAAREEAEQVIFGALD 165          
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.696e-16
Identity = 54/177 (30.51%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  108 LPNFVASAK---GKPGFHYLISNALYLLLIPLFVIVLTYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQIASQTGKFSDETLDFKKKILERSGIGNMTYGPKSLMENPAENGNMEEARKETEGVIIGAVDE 629
            +P F +S K    K G+ YL+++ L  LLIP+  IV    L        ++  +WN L F                    +T+Y MS+P+ +YLV++SCYKP  +      +F++ +    K   ++++F+ +ILERSG+G  T  P ++   P     M+ AR E + VI  A+D+
Sbjct:    6 MPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPE---EILNVWNSLQFDL-----VQVLCSSFFVIFISTVYFMSKPRTIYLVDYSCYKPPVTCRVPFATFMEHSRLILKDKPKSVEFQMRILERSGLGEETCLPPAIHYIP-PTPTMDAARSEAQMVIFEAMDD 173          

HSP 2 Score: 23.483 bits (49), Expect = 6.696e-16
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  638 KTGVKPKAIGILVV 679
            KTG+KPK + IL+V
Sbjct:  177 KTGLKPKDVDILIV 190          
BLAST of FC930126 vs. ExPASy Swiss-Prot
Match: KCS16_ARATH (3-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana GN=KCS16 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.131e-15
Identity = 63/171 (36.84%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  132 KGKPGFHYLISNALYLLLIPLFVIVLTYDLFSTLSTIYDLFQIWNELSFKFDNXXXXXXXXXXXXXXXFTTIYLMSRPKNVYLVNFSCYKPDPSRMCTRESFLQ---IASQTGKF---SDETLDFKKKILERSGIGNMTYGPKSLMENPAENGNMEEARKETEGVIIGAVD 626
            K K  F+YL+++   L  +PL V +      S LST  DL   +  L     +                +T+YLM+RPK VYLV+FSCY P      + +  +Q   +  + G +   SD  +DF +KILERSG+G  TY P+ L   P +  N+  +R ETE VIIGAVD
Sbjct:    7 KVKIFFNYLMAHRFKLCFLPLMVAIAVEA--SRLST-QDLQNFYLYLQNNHTSLTMFFLYLALG-----STLYLMTRPKPVYLVDFSCYLPPSHLKASTQRIMQHVRLVREAGAWKQESDYLMDFCEKILERSGLGQETYVPEGLQTLPLQQ-NLAVSRIETEEVIIGAVD 168          

HSP 2 Score: 21.9422 bits (45), Expect = 1.131e-15
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  641 TGVKPKAIGILVV 679
            TG+ P  IGILVV
Sbjct:  174 TGISPSDIGILVV 186          
The following BLAST results are available for this feature:
BLAST of FC930126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
KCS19_ARATH8.916e-3544.943-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS11_ARATH5.060e-3242.373-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS17_ARATH8.575e-3241.243-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS10_ARATH1.146e-2739.113-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS9_ARATH9.459e-2336.463-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS4_ARATH1.617e-2236.673-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS1_ARATH4.049e-2032.263-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS2_ARATH7.756e-1732.52Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS6_ARATH6.696e-1630.513-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS16_ARATH1.131e-1536.843-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34004A11EF PostHarvC1 Citrus clementina cDNA clone C34004A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930126 ID=FC930126; Name=FC930126; organism=Citrus clementina; type=EST; length=696bp
GGTGCTCGCTCTCTCTATCCCTCAACTTGTTCGGCTACCTAGCTCGCTCT
TTAGGTCAAAAGGTATCAATGGCTAATGAAAGTGAAGGAAAGTTGCAAAA
AGATCAACTACCAAACTTTGTCGCATCCGCAAAAGGGAAACCTGGTTTCC
ACTATTTAATCTCTAACGCTCTTTATCTCTTGCTCATTCCACTCTTTGTC
ATTGTTTTGACTTATGATCTGTTTTCAACTTTGAGTACAATTTATGATTT
GTTTCAGATTTGGAACGAGCTTAGTTTCAAATTCGACAATGTGACAGTAC
TATTACTAGTAGTACTATGCTTGGTTTCCCTTGTCTTTACAACCATTTAC
CTGATGAGCCGCCCGAAAAATGTTTACTTGGTGAACTTTTCATGTTATAA
GCCTGACCCATCTCGAATGTGCACTCGAGAGAGTTTCTTACAAATAGCCA
GCCAAACTGGGAAATTTTCAGACGAAACTTTAGACTTCAAAAAGAAAATT
TTGGAGAGATCGGGGATTGGGAATATGACATATGGTCCAAAATCCTTGAT
GGAAAACCCGGCAGAAAATGGTAATATGGAGGAGGCAAGGAAGGAGACTG
AGGGTGTGATAATTGGAGCCGTAGATGAGCTCTTGGCAAAACTGGGGTGA
AGCCTAAAGCTATTGGGATTCTTGTGGTGATAGCAGCTCGTTTATC
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