FC930131

Overview
NameFC930131
Unique NameFC930131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930131 vs. ExPASy Swiss-Prot
Match: S2539_RAT (Solute carrier family 25 member 39 OS=Rattus norvegicus GN=Slc25a39 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 49/150 (32.67%), Postives = 71/150 (47.33%), Query Frame = 2
Query:  314 IIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYF-GPRTMFADLRCSPSCTRAGVHGTVSMCP---------PDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSL 733
            + + PLDV K RLQ+Q   VA      +    ++Y   P T+ +  +C   C   GV   + +CP          D  ++ GTLD F KI+R EG   LW G  A L + VP   IY   YD  + +L       + ++  Y P+VAG+L
Sbjct:   27 LFMTPLDVVKVRLQSQRPTVASELTTPSRFWSLSYTKSPSTLQSPGKCLLYCN--GVLEPLYLCPNGTRCATWFQDPTRFTGTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAFL----CGQSLTSDLYAPMVAGAL 170          
BLAST of FC930131 vs. ExPASy Swiss-Prot
Match: S2539_HUMAN (Solute carrier family 25 member 39 OS=Homo sapiens GN=SLC25A39 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 48/150 (32.00%), Postives = 73/150 (48.67%), Query Frame = 2
Query:  314 IIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMAYFG-PRTMFADLRCSPSCTRAGVHGTVSMCP---------PDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSL 733
            + + PLDV K RLQ+Q   +A     S+ +  ++Y   P ++ +  +C   C   GV   + +CP          D  ++ GT+D F KI+R EG   LW G  A L + VP   IY   YD  + +L       A ++  Y P+VAG+L
Sbjct:   27 LFMTPLDVVKVRLQSQRPSMASELMPSSRLWSLSYTKLPSSLQSTGKCLLYCN--GVLEPLYLCPNGARCATWFQDPTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAFL----CGRALTSDLYAPMVAGAL 170          
BLAST of FC930131 vs. ExPASy Swiss-Prot
Match: S2539_BOVIN (Solute carrier family 25 member 39 OS=Bos taurus GN=SLC25A39 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 50/150 (33.33%), Postives = 70/150 (46.67%), Query Frame = 2
Query:  314 IIVNPLDVAKTRLQAQAAGVAYS-HPLSNLISRMAYFGPRTMFADLRCSPSCTRAGVHGTVSMCP---------PDCFQYRGTLDVFYKIIRQEGFSRLWRGTNAGLALAVPTVGIYLPCYDVFRNWLEEATDKNAPSATPYVPLVAGSL 733
            + + PLDV K RLQ+Q   VA    P S L S      P ++ +  +C   C   GV   + +CP          D  ++ GT+D F KI+R EG   LW G  A L + VP    Y   YD  + +L       A ++  Y P+VAG+L
Sbjct:   27 LFMTPLDVVKVRLQSQRPSVASELMPPSRLWSLSYAKLPSSLRSTGKCLLYCN--GVLEPLYLCPNGARCATWFQDPTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAAYFTAYDQLKAFL----CGRALTSDLYAPMVAGAL 170          
The following BLAST results are available for this feature:
BLAST of FC930131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
S2539_RAT1.836e-1132.67Solute carrier family 25 member 39 OS=Rattus norve... [more]
S2539_HUMAN3.132e-1132.00Solute carrier family 25 member 39 OS=Homo sapiens... [more]
S2539_BOVIN9.112e-1133.33Solute carrier family 25 member 39 OS=Bos taurus G... [more]
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Properties
Property NameValue
Genbank descriptionC34004B04EF PostHarvC1 Citrus clementina cDNA clone C34004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930131 ID=FC930131; Name=FC930131; organism=Citrus clementina; type=EST; length=733bp
GACAATAAAACAAAAACTAATTTAAAGTAGCTTTGGTTTTGTTTTCCTTT
CTAAAAGGCCAGGTAGGGTTTTAGAAGAGATGGCGGAGGCGGCGGAGACT
GAGGCAACGGAGCATCCGTGGATGAGTCCGGAGAAAACCGAGATTAATGG
CCGTGACTTGACGATAACGGTATTGACGGTAGGTGATGATAGACATGAGA
GAGGAGGATTGGCTGCGTCGCAGTCGAATGAAACTACATCAAACGTTTCC
GATCGAAAGTTAGGGTTAGGAGAGAGAGCTTTTTCCGCCGCTGGTGCTGC
GTTTTTGTCGGCTATCATCGTCAATCCTCTTGACGTTGCCAAGACAAGGT
TGCAAGCACAAGCTGCTGGAGTAGCTTACTCACATCCGTTAAGCAATCTT
ATTAGTCGTATGGCCTATTTTGGGCCTAGAACAATGTTTGCAGATTTAAG
GTGTTCTCCGTCCTGTACACGTGCTGGAGTTCATGGTACTGTGTCAATGT
GTCCTCCTGATTGTTTTCAGTACAGAGGAACACTTGATGTCTTTTACAAA
ATCATACGGCAGGAAGGATTTTCCAGGCTGTGGAGAGGCACAAATGCTGG
TTTGGCATTGGCTGTACCAACGGTGGGAATCTACCTACCTTGCTATGACG
TGTTCCGCAACTGGTTAGAAGAGGCAACCGATAAGAATGCTCCNAGTGCG
ACACCATATGTCCCTTTGGTTGCAGGATCATTG
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