FC930135

Overview
NameFC930135
Unique NameFC930135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930135 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.744e-12
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:  202 GWSHFAQFTIAVVNR-DPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD---GFKDGDTLIIKAQVQV 396
            GWS ++QF++AVVN+ + + S   +T H+F  +E DWG+  FM LS++ +   G+   DT++I+A+V V
Sbjct:  112 GWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAV 180

HSP 2 Score: 37.3502 bits (85), Expect = 3.744e-12
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 3 
Query:    3 FEVGGYKWYILIYPQGCDVCNHLSLFPCVAN 95
            F VGGYKW ILI+P+G +V +HLS++  VA+
Sbjct:   76 FVVGGYKWRILIFPKGNNV-DHLSMYLDVAD 105
The following BLAST results are available for this feature:
BLAST of FC930135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBP13_ARATH3.744e-1240.58Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC34004B08EF PostHarvC1 Citrus clementina cDNA clone C34004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930135 ID=FC930135; Name=FC930135; organism=Citrus clementina; type=EST; length=704bp
CATTTGAAGTTGGTGGCTACAAATGGTATATTCTGATTTATCCACAAGGC
TGTGATGTTTGCAATCATCTATCTTTGTTCCCCTGTGTTGCCAACCATGA
CAAACTCCTTCCAGGTCTGATATTATAAACTGGTATCGAATTATTTCTTC
AATCTTTACATTTGTTTTCTTTTAAATAAAAACTTTCTCTGTTCGTCAAC
AGGTTGGAGTCATTTTGCTCAGTTTACAATAGCCGTTGTGAATAGAGATC
CAAAGAAATCCAAATATTCTGATACTTTACATCGATTTTGGAAGAAAGAG
CATGACTGGGGCTGGAAAAAGTTTATGGAGCTCTCAAAAGTTTCTGATGG
GTTTAAAGATGGTGATACTCTCATTATAAAAGCTCAAGTTCAAGTCATCA
GGGAGAAAACAGATCGCCCTTTTCGTTGCCTTGATTGTCAGTACAGGAGA
GAACTTGTTAGGGTATATTTGACTAATGTAGAGCAAATATGTCGGCGTTT
TGTAGAAGAAAGGCGAGGGAAACTTGGAAGGTTAATAGAGGATAAAGCTA
GGTGGTCAAGCTTCTGTGCATTCTGGTTGGGAATTGACCAGAATGCCAGG
CGCCGTATGTCTAGAGAGAAAACAGATGCAATTCTGAAAGTAGTTGTGAA
ACACTTTTTTATAGAGAAGGAAGTCACATCTACTTTGGTAATGGATTCCT
TGTA
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