FC930138

Overview
NameFC930138
Unique NameFC930138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.311e-85
Identity = 155/184 (84.24%), Postives = 167/184 (90.76%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYSTFE ELAD IPVVKT I G RIIG     NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VAL HTDLD+ETEE+IADVLGVEVF QT+AGNILVGSYC+ +N+GGLVHPHTSIEDLDELSTLLQVPL AG
Sbjct:    1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTSIEDLDELSTLLQVPLVAG 184          
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.023e-76
Identity = 137/184 (74.46%), Postives = 158/184 (85.87%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T I G RIIGR+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQT++GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPL AG
Sbjct:    1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAG 184          
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.311e-75
Identity = 138/184 (75.00%), Postives = 157/184 (85.33%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MA R  FEN+CEVG F+KLTNA+CLVAIGGSE+FYS FE EL+D IPVV   I G RIIGR+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQTVA  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPL AG
Sbjct:    1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAG 184          
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.507e-75
Identity = 136/184 (73.91%), Postives = 156/184 (84.78%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV   I G RIIGR+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQTVA  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPL AG
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAG 184          
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 4.218e-74
Identity = 135/184 (73.37%), Postives = 155/184 (84.24%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MA R  FEN+CE+G F+KLTN++CLVAIGGSE+FYS FE ELA  IPVV   I G RIIGR+CVGN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQTVA  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPL AG
Sbjct:    1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAG 184          
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.734e-73
Identity = 134/184 (72.83%), Postives = 156/184 (84.78%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MA R  FENS E+GVFS LTN++ LVA+GGSE+FYS FEAEL DV+PVV T IGG RIIGRL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D++RETEEIIADVL VEVFRQTVAGN+L GSYC+ SN+G LVHP TSI++ DELS+LLQVPL AG
Sbjct:    1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAG 184          
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 273.478 bits (698), Expect = 7.954e-73
Identity = 135/184 (73.37%), Postives = 157/184 (85.33%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MA R+ FEN+ ++GVF+KLTN +CLVAIGGSE+FYS FEAEL D IPVV   +GG RIIGRL VGN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H DLD+ETEEIIADVL VEVFRQT+A N LVGSY   SN+GG+VHP TSI+D DELS+LLQVPL AG
Sbjct:    1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAG 184          
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.794e-72
Identity = 135/184 (73.37%), Postives = 153/184 (83.15%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MATRL +ENSC+VGVF KLTN +CLV   GS+ F  T E  LAD IPVV+T I G RI+GRL  GNKNGLLLP+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEEIIADVLGVEVFRQTV+GN+LVG+YC+ +N+G LVHP TSI D DELS+LLQVPL AG
Sbjct:    1 MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAG 184          
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.521e-66
Identity = 124/186 (66.67%), Postives = 155/186 (83.33%), Query Frame = 2
Query:  158 MATRLMFENS-CEVGVFSKLTNAFCLV-AIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MATRL ++N+ CE+GVFSKLTNA+CLV A   S +F++ +E++L  VIP+V T IGG+  IG LCVGNKNGLLL HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEEII+DVLGVEV+RQT+A N LVGSYCS SN GG+VH +T++E++ EL+ L+QVPL AG
Sbjct:    1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQVPLVAG 186          
BLAST of FC930138 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.440e-58
Identity = 108/184 (58.70%), Postives = 142/184 (77.17%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTPIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLXAG 709
            MA R+ +E S +VGVF  LTN++CLV +GG+++FYS  EAEL+D+IPVV T I   RI+GRL VGN++GLL+P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +VL VEVFR ++A N LVGSYC  S+ G LV   T  E   E++ LLQ+P+ AG
Sbjct:    1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVAG 184          
The following BLAST results are available for this feature:
BLAST of FC930138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF6_BETVU5.311e-8584.24Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_YEAST2.023e-7674.46Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_MOUSE1.311e-7575.00Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN6.507e-7573.91Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_BOVIN4.218e-7473.37Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_SCHPO2.734e-7372.83Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DROME7.954e-7373.37Probable eukaryotic translation initiation factor ... [more]
IF6_DICDI8.794e-7273.37Probable eukaryotic translation initiation factor ... [more]
IF6_ARATH5.521e-6666.67Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_CAEEL9.440e-5858.70Eukaryotic translation initiation factor 6 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC34004B11EF PostHarvC1 Citrus clementina cDNA clone C34004B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930138 ID=FC930138; Name=FC930138; organism=Citrus clementina; type=EST; length=711bp
GATCGCAGGTAGTTAGTTATATTTGATTTTATTGATATGGATATTCTGTA
CATGTTCGGTGGCTAACAGAAAAATCGAATTTGTATGTTATTCTTGCAGG
TCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTTAATT
TGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTTGGTG
TGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGGTTCT
GAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTTATTCCTGT
TGTTAAAACACCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGTGTTG
GTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGAGCTT
CAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAGCGTATTGA
AGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCATGTTG
CTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGCAGAT
GTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAATATCCTTGT
TGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCACCCTCATA
CATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAGTACCTTTG
GNTGCTGGCAC
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