FC930140

Overview
NameFC930140
Unique NameFC930140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930140_ssr180 microsatellite FC930140_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15129 contig Ccv1_Contig15129:914..1647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.667e-113
Identity = 196/236 (83.05%), Postives = 215/236 (91.10%), Query Frame = 1
Query:    1 MDLPLYFTPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEL 708
            MDLPLYF PKEMVK   LIF+FD TKKARFG+LPRYAK++  ++WFELPNCFIFHNANAWEEEDE+VLITCRL+ P+LD+V GAVKEKL+NFSNELYEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLHAEPD  KTKLEVGGNV+G++DLGPGRFGSEAV+VPR PGT SEEDDGYLIFF HDE TGKS V+VIDAK MSA+PVAVVEL
Sbjct:  282 MDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDDKHIRWFELPNCFIFHNANAWEEEDEIVLITCRLENPNLDVVGGAVKEKLDNFSNELYEMRFNMKTGEASQKKLSASTVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTKLEVGGNVQGLYDLGPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVEL 517          
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.081e-112
Identity = 197/236 (83.47%), Postives = 213/236 (90.25%), Query Frame = 1
Query:    1 MDLPLYFTPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEL 708
            MDLPLYF PKEMVK  KLIF+FD TKKARFG+LPRYAK+++ ++WFELPNCFIFHNANAWEE DEVVLITCRL+ PDLDMVNGAVKEKLENF NELYEMRFN+KTG ASQK+LS SAVDFPR+NE YT RKQRYVYGTILD+I KV GIIKFDLHAEP+  K KLEVGGNV+GIFDLGPGR+GSEAVFVPRE G  SEEDDGYLIFF HDE TGKS VNVIDAKTMSA+PVAVVEL
Sbjct:  286 MDLPLYFQPKEMVKGGKLIFSFDATKKARFGVLPRYAKDDSLIRWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGAVKEKLENFKNELYEMRFNMKTGAASQKQLSVSAVDFPRINESYTTRKQRYVYGTILDNITKVKGIIKFDLHAEPEAGKKKLEVGGNVQGIFDLGPGRYGSEAVFVPRERGIKSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVEL 521          
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 395.586 bits (1015), Expect = 1.282e-109
Identity = 189/236 (80.08%), Postives = 214/236 (90.68%), Query Frame = 1
Query:    1 MDLPLYFTPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEL 708
            MDLP++F PKEMVKE K+I++FD TKKARFG+LPRYAK+E  ++WFELPNCFIFHNANAWEEEDEVVLITCRL+ PDLDMV+G VKEKLENF NELYEMRFN+KTG ASQK+LSASAVDFPR+NECYTG+KQRYVYGTILDSIAKVTGIIKFDLHAE +  K  LEVGGN++GI+DLG GR+GSEA++VPRE   ++EEDDGYLIFF HDE TGKS V VIDAKTMSA+PVAVVEL
Sbjct:  282 MDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDMVSGKVKEKLENFGNELYEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVEL 514          

HSP 2 Score: 22.7126 bits (47), Expect = 1.282e-109
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3
Query:  705 ITHRXPYGFH 734
            + HR PYGFH
Sbjct:  514 LPHRVPYGFH 523          
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 2.492e-109
Identity = 191/236 (80.93%), Postives = 207/236 (87.71%), Query Frame = 1
Query:    1 MDLPLYFTPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEL 708
            MDLPL F PKEMVK   LIF+FD TKKARFG+LPRYAK+E  ++WFELPNCFIFHNANAWEEEDEVVLITCRL  P LD V G V+EKLENFSNELYEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSIAKVTGIIKFDLHAEPD  K KLEVGGNV+G++DLGPG+FGSEAV++PR PG  SEEDDGYL+ F HDE  GKS V+VIDAKTMSADPVAVVEL
Sbjct:  284 MDLPLIFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDEQHIRWFELPNCFIFHNANAWEEEDEVVLITCRLQNPKLDNVGGTVQEKLENFSNELYEMRFNMKTGEASQKKLSASTVDFPRVNENYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDHGKEKLEVGGNVQGLYDLGPGKFGSEAVYIPRVPGIESEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVEL 519          
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.012e-31
Identity = 78/217 (35.94%), Postives = 126/217 (58.06%), Query Frame = 1
Query:   67 DDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEED--EVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGT-SSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEL 708
            D+ K  R G++P+YA +E++MKWFE+P   I H  NAW+E+D   VVLI      P++  +   + E+++     + +++ +L TG+  +  +SA  +DF  +N  + GR  RYVY  I D + K++G++K D+     ++ T        R ++  G G +G E  FV R+PG   +EEDDGY++ + HDE TG+S   V+DAK+   + VA V L
Sbjct:  372 DNGKTPRLGVIPKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIA-----PNIMSIEHTL-ERMDLVHALVEKVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGDRDDCTV------ARRMY--GSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRL 574          

HSP 2 Score: 21.557 bits (44), Expect = 3.012e-31
Identity = 7/11 (63.64%), Postives = 8/11 (72.73%), Query Frame = 3
Query:  702 RITHRXPYGFH 734
            R+  R PYGFH
Sbjct:  573 RLPRRVPYGFH 583          
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.350e-29
Identity = 82/240 (34.17%), Postives = 129/240 (53.75%), Query Frame = 1
Query:    4 DLPLYFTPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEE-DEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIF---DLGPGRFGSEAVFVPREPGTS-SEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEL 708
            D+ +   P E+V+  ++I   D  K  R G+LPRYA ++++M+WF++P   + H  NAWEEE  EVV+I      P++  +  A+ ++ +     +   R  LK+G  S+  LSA  +DF  ++  Y+GRK RY Y  + D + K+ G++K D            E+ G    +    + G G FG E  FVP     S  EEDDGY++ + HDE  G+SS  V+DA++   + +A V L
Sbjct:  125 DIQIVMKPAEIVRGRRMIGP-DLEKVPRLGLLPRYATSDSEMRWFDVPGFNMVHVVNAWEEEGGEVVVIVA----PNVSPIENAI-DRFDLLHVSVEMARIELKSGSVSRTLLSAENLDFGVIHRGYSGRKSRYAYLGVGDPMPKIRGVVKVD-----------FELAGRGECVVARREFGVGCFGGEPFFVPASSKKSGGEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVL 347          
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.266e-28
Identity = 84/252 (33.33%), Postives = 129/252 (51.19%), Query Frame = 1
Query:    4 DLPLYFTPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWE--EEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASA-----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELHI--GXHTDF 732
            D  + F   EM++    +  +D  K ARFGIL +YA++ + +KW + P+CF FH  NAWE  E DEVV+I   +  PD         E  EN  + L E+R NLKTG ++++ + ++      ++   VN    GRK ++ Y  + +   KV+G  K DL     E K  L            G  R+G E +F+P E G   EED+GY++ F HDEKT KS + +++A ++  +    +   +  G H  F
Sbjct:  359 DQQVVFKLPEMIRGGSPV-VYDKNKVARFGILDKYAEDSSNIKWIDAPDCFCFHLWNAWEEPETDEVVVIGSCMTPPD-----SIFNESDENLKSVLSEIRLNLKTGESTRRPIISNEDQQVNLEAGMVNRNMLGRKTKFAYLALAEPWPKVSGFAKVDL--TTGEVKKHL-----------YGDNRYGGEPLFLPGEGG---EEDEGYILCFVHDEKTWKSELQIVNAVSLEVEATVKLPSRVPYGFHGTF 588          
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28
Identity = 83/249 (33.33%), Postives = 127/249 (51.00%), Query Frame = 1
Query:    4 DLPLYFTPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWE--EEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFP--RVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELHI--GXHTDF 732
            D  + F   EM++    +  +D+ KK+RFGIL + AK+ + ++W E+P+CF FH  N+WE  E DEVV+I   +  PD         E  E   + L E+R NLKTG ++++ + +  V+     VN    GRK RY Y  + +   KV+G  K DL              G +R  +  G G++G E +F+P   G   EED GY++ F HDE+  KS + +I+A  M  +    +   +  G H  F
Sbjct:  419 DQQVVFRLPEMIRGGSPV-VYDEKKKSRFGILNKNAKDASSIQWIEVPDCFCFHLWNSWEEPETDEVVVIGSCMTPPD-----SIFNEHDETLQSVLSEIRLNLKTGESTRRPVISEQVNLEAGMVNRNLLGRKTRYAYLALTEPWPKVSGFAKVDLST------------GEIRK-YIYGEGKYGGEPLFLPSGDG---EEDGGYIMVFVHDEEKVKSELQLINAVNMKLEATVTLPSRVPYGFHGTF 645          
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.447e-26
Identity = 80/243 (32.92%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 DLPLYFTPKEMVKENKLIFTFDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWEEE--DEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASA----VDFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSE--EDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVEL 708
            D  + F  +EM++    +   D  K +RFG+LP++A + ++M W ++P+CF FH  NAWE+E   EVV+I   +   D         E  E   + L E+R + +TG ++++ +   +    ++   VN    GR+ RY Y  + +   KV+G  K DL      E TK          F+ G GRFG E  FVP +P  +    EDDGY++ F HDE+ G S + V++A  M  +  A V+L
Sbjct:  360 DHQVVFKLQEMLRGGSPV-VLDKEKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPAD-----SIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLST---GELTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE--ATVQL 581          
BLAST of FC930140 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25
Identity = 81/232 (34.91%), Postives = 119/232 (51.29%), Query Frame = 1
Query:   64 FDDTKKARFGILPRYAKNEAQMKWFELPNCFIFHNANAWE--EEDEVVLITCRLDKPDLDMVNGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAV----DFPRVNECYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSE-EDDGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELHI--GXHTDF 732
            +D  K +RFGILPR AK+ ++M W E P  F FH  NAWE  E DEVV+I   +   D         E  E  ++ L E+R NLKTG ++++ +   +V    +   VN    GRK RY Y  I +   KV+G  K DL              G V+  F  G  ++G E  F+PR  G  S+ EDDGY++ F HDE++ +S +++++A T+  +    +   +  G H  F
Sbjct:  368 YDGEKISRFGILPRNAKDASEMVWVESPETFCFHLWNAWESPETDEVVVIGSCMTPAD-----SIFNECDEQLNSVLSEIRLNLKTGKSTRRTIIPGSVQMNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLST------------GEVKNHF-YGGKKYGGEPFFLPR--GLESDGEDDGYIMSFVHDEESWESELHIVNAVTLELEATVKLPSRVPYGFHGTF 579          
The following BLAST results are available for this feature:
BLAST of FC930140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CCD1_PEA1.667e-11383.05Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA1.081e-11283.47Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_ARATH1.282e-10980.08Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PHAVU2.492e-10980.93Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD4_ARATH3.012e-3135.94Probable carotenoid cleavage dioxygenase 4, chloro... [more]
ZCD_CROSA4.350e-2934.17Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
NCED3_ARATH1.266e-2833.339-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED9_ARATH8.203e-2833.339-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED1_MAIZE3.447e-2632.929-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED5_ARATH4.977e-2534.91Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]

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Properties
Property NameValue
Genbank descriptionC34004C01EF PostHarvC1 Citrus clementina cDNA clone C34004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930140 ID=FC930140; Name=FC930140; organism=Citrus clementina; type=EST; length=734bp
ATGGATCTTCCGCTGTATTTCACACCAAAGGAAATGGTGAAAGAAAACAA
GCTGATATTCACATTTGATGATACAAAGAAAGCTCGTTTTGGTATACTTC
CCCGATATGCAAAGAATGAGGCTCAAATGAAATGGTTTGAGCTTCCTAAT
TGCTTTATCTTCCATAATGCCAATGCTTGGGAGGAGGAGGATGAAGTGGT
TCTGATCACTTGCCGCCTAGACAAGCCGGATCTAGACATGGTCAATGGGG
CTGTCAAAGAAAAGCTAGAAAATTTCTCAAATGAACTGTATGAGATGAGA
TTCAACTTGAAAACTGGCCTAGCTTCACAAAAGAGATTATCAGCATCCGC
TGTTGATTTTCCTAGGGTGAATGAGTGCTACACTGGCAGGAAGCAAAGAT
ATGTGTATGGAACAATACTAGATAGCATTGCAAAAGTCACAGGGATCATC
AAATTTGATCTGCATGCTGAACCAGACGAAGAGAAAACAAAGCTTGAAGT
TGGAGGAAATGTGAGAGGCATCTTTGACCTGGGCCCTGGAAGATTTGGTT
CAGAGGCTGTTTTTGTTCCTAGAGAGCCTGGTACCTCTTCTGAAGAAGAT
GATGGATACTTAATATTCTTCTCTCATGATGAGAAAACCGGAAAGTCATC
AGTGAACGTGATTGATGCAAAAACAATGTCAGCTGATCCTGTTGCAGTTG
TCGAATTACACATAGGGNTCCATACGGATTTCAT
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