FC930145

Overview
NameFC930145
Unique NameFC930145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930145_ssr163 microsatellite FC930145_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC930145 vs. ExPASy Swiss-Prot
Match: ANL2_ARATH (Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  491 GEQFDPSVVGRIREEEFESRSGSDNVEGASGDDQEANEDGPPRKKKYHRHTPHQIQELESFFR 679
            G+ FD SV  R REEE ESRSGSDNVEG SG+DQ+A  D PPRKK+YHRHTP QIQELES F+
Sbjct:   93 GDTFDGSVNRRSREEEHESRSGSDNVEGISGEDQDA-ADKPPRKKRYHRHTPQQIQELESMFK 154          
BLAST of FC930145 vs. ExPASy Swiss-Prot
Match: ROC6_ORYSJ (Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  491 GEQFDPSVVGRIREEEFESRSGSDNVEGASGDDQEANEDGPPRKKK-YHRHTPHQIQELESFFR 679
            G   D   +GR REEE +SRSGSDN++GASGD+ + +   P +KKK YHRHTP QIQELE+ F+
Sbjct:   79 GSGGDGDSLGRGREEENDSRSGSDNLDGASGDELDPDNSNPRKKKKRYHRHTPQQIQELEAVFK 142          
BLAST of FC930145 vs. ExPASy Swiss-Prot
Match: ROC2_ORYSJ (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 2
Query:  533 EEFESRSGSDNVEGASGDDQEANEDGPPRKKKYHRHTPHQIQELESFFR 679
            +EFES+SGS+NV+G S DDQ+ N+   PRKK+YHRHT HQIQE+E+FF+
Sbjct:   78 DEFESKSGSENVDGVSVDDQDPNQR--PRKKRYHRHTQHQIQEMEAFFK 124          
BLAST of FC930145 vs. ExPASy Swiss-Prot
Match: ROC1_ORYSJ (Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  461 AMDAGEMGLIGEQFDPSVVGRIREEEFESRSGSDNVEGA----SGDDQEANEDGPPRKKKYHRHTPHQIQELESFFR 679
            A D+G+  L G      +V     +EFES+S S+NV+GA    SGDDQ+ N+   PRKK+YHRHT HQIQE+E+FF+
Sbjct:   57 AADSGDNMLHGRADAGGLV-----DEFESKSCSENVDGAGDGLSGDDQDPNQR--PRKKRYHRHTQHQIQEMEAFFK 126          
The following BLAST results are available for this feature:
BLAST of FC930145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ANL2_ARATH3.282e-1873.02Homeobox-leucine zipper protein ANTHOCYANINLESS 2 ... [more]
ROC6_ORYSJ5.423e-1357.81Homeobox-leucine zipper protein ROC6 OS=Oryza sati... [more]
ROC2_ORYSJ3.515e-1265.31Homeobox-leucine zipper protein ROC2 OS=Oryza sati... [more]
ROC1_ORYSJ5.076e-1150.65Homeobox-leucine zipper protein ROC1 OS=Oryza sati... [more]
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Properties
Property NameValue
Genbank descriptionC34004C06EF PostHarvC1 Citrus clementina cDNA clone C34004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930145 ID=FC930145; Name=FC930145; organism=Citrus clementina; type=EST; length=709bp
GGTGGCTCTCCCTAATCTCTATCCATTATTTATTATTAGCCAATCTAAAT
TCATCGTCATTGAATCTCATCTATGTAAAAAAAAAAAAAAAAAAAAAAGA
GAAAATAGTTGCATGGGATTTGAAGGAAGCAGGAGGCCATTGAAGAACTG
AAGAAGCCATGAATCATCATCATCATAATATCATATGATATGATTTTTCA
TTATCGCGGTTTTGTTTTGATATAATCTAGGAAGGCTTTGAATTTTTTTT
TAAATTTCTGTTAAAAAAAAAGAACCCATTTGACTATTAGTTCTTATCCC
AACGGCGAAAGAGAAAGTGAAAGATTTGGGAGGATCTTTAAAAATCCATA
TCAAATATCTCTGTGTTGTACCGTGTGCGTGCATTAACAGAGACTTCTGC
TTTTGCTGCTTCTATTTTCTTTTCTTACTCTCACTGTCAAAAAAATATAA
AAAGAAGAACGCAATGGATGCTGGTGAGATGGGTCTGATTGGGGAACAAT
TTGATCCTAGTGTTGTGGGGAGGATCAGGGAGGAGGAGTTTGAAAGCCGG
TCTGGAAGCGATAATGTTGAAGGTGCATCTGGTGACGATCAAGAAGCTAA
CGAAGATGGCCCGCCGCGGAAGAAAAAGTACCATAGGCATACTCCTCATC
AGATTCAAGAGCTTGAATCTTTCTTTAGGAGTGTCCACACCAGATGAGAA
CAAAGGTCG
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