FC930147

Overview
NameFC930147
Unique NameFC930147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930147_ssr342 microsatellite FC930147_ssr342:342..353. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14206 contig Ccv1_Contig14206:133..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930147 vs. ExPASy Swiss-Prot
Match: SNP33_ARATH (SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.043e-61
Identity = 122/183 (66.67%), Postives = 145/183 (79.23%), Query Frame = 1
Query:  151 MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSS-YSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLH*QGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWK 696
            MFGL+KSP  + +HNSVD     SS+ NPFDSDDE DNK TL PSKRT+SEP+L      TNPF  + +++  + SS  SL S ++ +Y+N+FRDSGG+ENQSVQELE YAVYKAE+TTK V GCLK+AE+IR DAT+TLV LH QGEQITRTH+ A  IDHDLSRGEKLLGSLGGMFS+TWK
Sbjct:    1 MFGLRKSPANLPKHNSVD---LKSSKPNPFDSDDESDNKHTLNPSKRTTSEPSLADM---TNPFGGERVQKGDSSSSKQSLFSNSKYQYKNNFRDSGGIENQSVQELEGYAVYKAEETTKSVQGCLKVAEDIRSDATRTLVMLHDQGEQITRTHHKAVEIDHDLSRGEKLLGSLGGMFSKTWK 177          
BLAST of FC930147 vs. ExPASy Swiss-Prot
Match: SNP30_ARATH (Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 80/159 (50.31%), Postives = 98/159 (61.64%), Query Frame = 1
Query:  220 SSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLH*QGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWK 696
            S  +N   ++   +   T+   +RTSSEP L T       FDDDD                  KY+N F DSGGL++Q+ +ELE YAVYKAE+TTK V+ CLKIAE+IR D  +TL  LH QGEQI RTH  A  +D DLSRGEKLL +LGGMFS+ WK
Sbjct:    7 SPGNNKLPNESSNNKGGTITAGRRTSSEPILITPD-----FDDDD------------------KYKNGFNDSGGLQSQTTEELEKYAVYKAEETTKGVNNCLKIAEDIRSDGARTLEMLHQQGEQINRTHEMAVDMDKDLSRGEKLLNNLGGMFSKPWK 142          
BLAST of FC930147 vs. ExPASy Swiss-Prot
Match: SNP29_ARATH (SNAP25 homologous protein SNAP29 OS=Arabidopsis thaliana GN=SNAP29 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.495e-33
Identity = 77/159 (48.43%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  220 SSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSSYSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTTKQVHGCLKIAEEIREDATKTLVSLH*QGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWK 696
            +S  NPFD + E                        S NPFDDDD  +               ++ +  + SGG ENQ+VQELE YAVY +E+TTK V GCLK+AEEIR DA+KTLV L+ QG+QITRTH     +DH LSRGEK+LG LGG+FSRTWK
Sbjct:    5 NSSWNPFDDEKE-------------------AAKSFSLNPFDDDDDDKEV-----------EKRFTSSLKPSGGKENQTVQELESYAVYNSEETTKTVQGCLKVAEEIRCDASKTLVMLNEQGDQITRTHQKTVDLDHHLSRGEKILGRLGGVFSRTWK 133          
The following BLAST results are available for this feature:
BLAST of FC930147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SNP33_ARATH1.043e-6166.67SNAP25 homologous protein SNAP33 OS=Arabidopsis th... [more]
SNP30_ARATH3.161e-3450.31Putative SNAP25 homologous protein SNAP30 OS=Arabi... [more]
SNP29_ARATH3.495e-3348.43SNAP25 homologous protein SNAP29 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC34004C08EF PostHarvC1 Citrus clementina cDNA clone C34004C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930147 ID=FC930147; Name=FC930147; organism=Citrus clementina; type=EST; length=697bp
AAACGTAAAGCTCTTTCTTCGCAAAGTTTCATTTTGACTAATTCCTTGTG
AGATTCTTGCGCTCTTGCAAGATTTTCTGCAACATTTTCTCAGGAACATT
GATTGATAGATCGATTTCTCTTCAGTTTGAATAATAGCTCTGCTTTAAGA
ATGTTTGGCTTAAAGAAATCTCCTTTAAGGGTTGGTAGGCATAATTCTGT
TGACCCTGGACACCAGGTTTCTTCTCGGTCCAACCCGTTTGATTCTGACG
ATGAGTTGGATAATAAGCAGACTCTTAAACCCTCAAAAAGGACTTCTTCT
GAACCCAACCTAACTACATCAAAAGTTAGTACTAATCCTTTTGATGATGA
TGATATAAAAGAGAACACCGCAGTGTCCTCATATTCCCTTACTTCAGCTG
CGAGAAACAAATATAGGAATGATTTTCGTGACTCTGGTGGATTAGAGAAC
CAGTCTGTGCAAGAATTGGAGGATTATGCTGTTTACAAGGCAGAGGACAC
TACAAAGCAAGTGCATGGCTGCCTGAAGATTGCTGAAGAGATTAGAGAGG
ATGCTACTAAGACTTTGGTAAGCTTGCACTAGCAGGGTGAGCAAATTACC
AGGACCCACTATACTGCTGCCAGCATTGATCACGATCTTAGTCGGGGTGA
AAAGCTTTTAGGAAGCCTAGGTGGGATGTTCTCTAGGACATGGAAGC
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