FC930153 | Citrus Genome Database

Overview


Name	FC930153
Unique Name	FC930153
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	731

Libraries


Library Name	Type
PostHarvC1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig12169	contig	Ccv1_Contig12169:3..735.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: CNBP_BOVIN (Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.844e-16
Identity = 46/132 (34.85%), Postives = 59/132 (44.70%), Query Frame = 1

Query:  370 SNLCKNCKRPGHFARECPNVA----------------------ICHNCGLPGHIASECTTKA-LCWNCREPGHMAGNC-----PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTMTR 681
            SN C  C R GH+ARECP                         IC+ CG  GH+A +C  +   C+NC   GH+A +C       E  C+ CGK GH ARDC        D + C +C + GH   DCT  +
Sbjct:    3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK 129

HSP 2 Score: 23.483 bits (49), Expect = 2.844e-16
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2

Query:  686 HNCRKTGHLARDC 724
            + C ++GHLAR+C
Sbjct:  152 YRCGESGHLAREC 164

HSP 3 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNV--AICHNCGLPGHIASECTTKALCWNCREPGHMAGNCP--NEGICHTCGKAGHRARDCT 594
            C NC +PGH AR+C +     C++CG  GHI  +CT K  C+ C E GH+A NC   +E  C+ CG++GH AR+CT
Sbjct:   91 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 165

HSP 4 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 1

Query:  373 NLCKNCKRPGHFARECP-NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMAGNCPN--EGICHTCGKAGHRARDCTAPPL----PPGDLRL---------CNNCYKQGHFAADCTMTRLA 687
            ++C  C   GH A++C      C+NCG  GHIA +C       +  C+NC +PGH+A +C +  E  C++CG+ GH  +DCT          G + +         C  C + GH A +CT+   A
Sbjct:   45 DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 170

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: GIS2_YEAST (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae GN=GIS2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 46/135 (34.07%), Postives = 61/135 (45.19%), Query Frame = 1

Query:  376 LCKNCKRPGHFARECP-----NVAICHNCGLPGHIASECTTKALCWNCREPGHMAGNCPN----------------------------EGI----CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADC 669
            LC NC +PGH   +C          C+NCG  GH+ SECT +  C+NC + GH++  CP                             +GI    C+TCG+AGH +RDC          RLC NC + GH + DC
Sbjct:   24 LCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQR-CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND-------RLCYNCNETGHISKDC 150

HSP 2 Score: 67.3958 bits (163), Expect = 1.711e-11
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 1

Query:  436 CHNCGLPGHIASECTTKALCWNCREPGHMAGNCPNEGI-----CHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADC 669
            C+ CG  GH+A +C ++ LC+NC +PGH+  +C          C+ CG+ GH   +CT        ++ C NC + GH + +C
Sbjct:    6 CYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECT--------VQRCFNCNQTGHISREC 80

HSP 3 Score: 22.7126 bits (47), Expect = 1.711e-11
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 2

Query:  686 HNCRKTGHLARDC 724
            + C + GH++RDC
Sbjct:  119 YTCGQAGHMSRDC 131

HSP 4 Score: 59.3066 bits (142), Expect = 8.199e-11
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1

Query:  493 CWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTMTR 681
            C+ C + GH+A +C +E +C+ C K GH   DCT P     + + C NC + GH  ++CT+ R
Sbjct:    6 CYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV--EFKQCYNCGETGHVRSECTVQR 66

HSP 5 Score: 28.4906 bits (62), Expect = 8.199e-11
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2

Query:  677 QGLHNCRKTGHLARDCP 727
            Q   NC +TGH++R+CP
Sbjct:   65 QRCFNCNQTGHISRECP 81

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: BYR3_SCHPO (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe GN=byr3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 47/115 (40.87%), Postives = 56/115 (48.70%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNVAICHNCGLPGHIASECT---TKALCWNCREPGHMAGNCPNE------GICHTCGKAGHRARDCTAPPLPPGDL----RLCNNCY---KQGHFAADCTM 675
            C NC   GH AREC   +IC+NC   GH ASECT    +  C+ C   GH+  +CP+         C+ CG+ GH ARDC       G      R   NCY     GH A DCTM
Sbjct:   19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTM 133

HSP 2 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 41/122 (33.61%), Postives = 54/122 (44.26%), Query Frame = 1

Query:  367 QSNLCKNCKRPGHFARECPNV------AICHNCGLPGHIASECTTKAL--------------CWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCT 672
            Q   C  C   GH  R+CP+       A C+ CG  GHIA +C T                 C+ C   GH A +C     C++CGK GHR+ +C        D +LC  C + GH A +CT
Sbjct:   56 QEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQ----QASDGQLCYKCNQPGHIAVNCT 173

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: CNBP_CHICK (Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.240e-16
Identity = 46/134 (34.33%), Postives = 59/134 (44.03%), Query Frame = 1

Query:  370 SNLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTTK--ALCWNCREPGHMAGNC-----PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTMTR 681
            SN C  C R GH+ARECP                          IC+ CG  GH+A +C  +    C+NC   GH+A +C       E  C+ CGK GH ARDC        D + C +C + GH   DCT  +
Sbjct:    3 SNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK 131

HSP 2 Score: 23.483 bits (49), Expect = 6.240e-16
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 2

Query:  686 HNCRKTGHLARDC 724
            + C ++GHLAR+C
Sbjct:  154 YRCGESGHLAREC 166

HSP 3 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNV--AICHNCGLPGHIASECTTKALCWNCREPGHMAGNCP--NEGICHTCGKAGHRARDCT 594
            C NC +PGH AR+C +     C++CG  GHI  +CT K  C+ C E GH+A NC   +E  C+ CG++GH AR+CT
Sbjct:   93 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 167

HSP 4 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 1

Query:  373 NLCKNCKRPGHFARECP--NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMAGNCPN--EGICHTCGKAGHRARDCTAPPL----PPGDLRL---------CNNCYKQGHFAADCTMTRLA 687
            ++C  C   GH A++C       C+NCG  GHIA +C       +  C+NC +PGH+A +C +  E  C++CG+ GH  +DCT          G + +         C  C + GH A +CT+   A
Sbjct:   46 DICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 172

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.954e-15
Identity = 46/142 (32.39%), Postives = 59/142 (41.55%), Query Frame = 1

Query:  370 SNLCKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKA--------LCWNCREPGHMAGNCPNEG--------ICHTCGKAGHRARDCT------------------APPLPPGDLRLCNNCYKQGHFAADC 669
            S  C+NC + GH+ARECP            C  CG  GH++ EC  +A         C+ C E GHM+ +CPN           C+ CG+ GH +RDC                   A     GD R C  C   GH + DC
Sbjct:   15 STSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGD-RTCYKCGDAGHISRDC 155

HSP 2 Score: 24.6386 bits (52), Expect = 2.954e-15
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 2

Query:  686 HNCRKTGHLARDCP 727
            + C   GH++RDCP
Sbjct:  171 YKCGDAGHISRDCP 184

HSP 3 Score: 68.9366 bits (167), Expect = 2.050e-12
Identity = 42/144 (29.17%), Postives = 57/144 (39.58%), Query Frame = 1

Query:  367 QSNLCKNCKRPGHFARECPNVA--------ICHNCGLPGHIASECTTKAL--------CWNCREPGHMAGNCPN------------------------EGICHTCGKAGHRARDC---TAPPLPPGDLRLCNNCYKQGHFAADC 669
            +S  C  C   GH +RECPN A         C  CG  GH++ +C   A         C+ C + GH++ +CP+                        +  C+ CG AGH +RDC          GD R C  C   GH + DC
Sbjct:   41 RSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGD-RTCYKCGDAGHISRDC 183

HSP 4 Score: 24.2534 bits (51), Expect = 2.050e-12
Identity = 6/14 (42.86%), Postives = 12/14 (85.71%), Query Frame = 2

Query:  686 HNCRKTGHLARDCP 727
            + C ++GH++R+CP
Sbjct:  199 YKCGESGHMSRECP 212

HSP 5 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 40/127 (31.50%), Postives = 53/127 (41.73%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNVA---------ICHNCGLPGHIASECTT---------KALCWNCREPGHMAGNCPNEG-------ICHTCGKAGHRARDCTAPPLPPGDLR-----LCNNCYKQGHFAADC 669
            C  C   GH +R+CPN            C+ CG  GHI+ +C              C+ C E GHM+  CP+ G        C+ CGK GH +R+C       G  R      C  C + GH + DC
Sbjct:  142 CYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDC 268

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: GLH4_CAEEL (ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 39/91 (42.86%), Postives = 47/91 (51.65%), Query Frame = 1

Query:  436 CHNCGLPGHIASECTTKAL----CWNCREPGHMAGNCPN----EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTMTRL 684
            CHNCG  GHI+ EC    +    C NC + GH A +C       G C  CG  GH A DC  P +P G    C NC ++GHFA DC   R+
Sbjct:  572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGP---CRNCGQEGHFAKDCQNERV 659

HSP 2 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 36/109 (33.03%), Postives = 49/109 (44.95%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNVAI----CHNCGLPGHIASEC----TTKALCWNCREPGHMAGNCPN----EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADC 669
            C NC   GH ++EC    +    C NC   GH AS+C      +  C NC   GH A +C       G C  CG+ GH A+DC    +       C  C ++GH+  +C
Sbjct:  572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680

HSP 3 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 34/97 (35.05%), Postives = 48/97 (49.48%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNVAI----CHNCGLPGHIASEC----TTKALCWNCREPGHMAGNCPNEGI-------CHTCGKAGHRARDCTAPPLPPGDLR 624
            C+NC++ GHFA +C    +    C NCG+ GH A +C      +  C NC + GH A +C NE +       C  C + GH   +C   P  P DL+
Sbjct:  595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC---PTRPKDLQ 688

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: CNBP_RAT (Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/139 (33.09%), Postives = 59/139 (42.45%), Query Frame = 1

Query:  370 SNLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGHIASECTTKA-LCWNCREPGHMAGNC-----PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTMTR 681
            SN C  C R GH+ARECP                                IC+ CG  GH+A +C  +   C+NC   GH+A +C       E  C+ CGK GH ARDC        D + C +C + GH   DCT  +
Sbjct:    3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK 136

HSP 2 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNV--AICHNCGLPGHIASECTTKALCWNCREPGHMAGNCP--NEGICHTCGKAGHRARDCT 594
            C NC +PGH AR+C +     C++CG  GHI  +CT K  C+ C E GH+A NC   +E  C+ CG++GH AR+CT
Sbjct:   98 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172

HSP 3 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 1

Query:  373 NLCKNCKRPGHFARECP-NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMAGNCPN--EGICHTCGKAGHRARDCTAPPL----PPGDLRL---------CNNCYKQGHFAADCTMTRLA 687
            ++C  C   GH A++C      C+NCG  GHIA +C       +  C+NC +PGH+A +C +  E  C++CG+ GH  +DCT          G + +         C  C + GH A +CT+   A
Sbjct:   52 DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: CNBP_PONAB (Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/139 (33.09%), Postives = 59/139 (42.45%), Query Frame = 1

Query:  370 SNLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGHIASECTTKA-LCWNCREPGHMAGNC-----PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTMTR 681
            SN C  C R GH+ARECP                                IC+ CG  GH+A +C  +   C+NC   GH+A +C       E  C+ CGK GH ARDC        D + C +C + GH   DCT  +
Sbjct:    3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK 136

HSP 2 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNV--AICHNCGLPGHIASECTTKALCWNCREPGHMAGNCP--NEGICHTCGKAGHRARDCT 594
            C NC +PGH AR+C +     C++CG  GHI  +CT K  C+ C E GH+A NC   +E  C+ CG++GH AR+CT
Sbjct:   98 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172

HSP 3 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 1

Query:  373 NLCKNCKRPGHFARECP-NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMAGNCPN--EGICHTCGKAGHRARDCTAPPL----PPGDLRL---------CNNCYKQGHFAADCTMTRLA 687
            ++C  C   GH A++C      C+NCG  GHIA +C       +  C+NC +PGH+A +C +  E  C++CG+ GH  +DCT          G + +         C  C + GH A +CT+   A
Sbjct:   52 DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: CNBP_HUMAN (Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 46/139 (33.09%), Postives = 59/139 (42.45%), Query Frame = 1

Query:  370 SNLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGHIASECTTKA-LCWNCREPGHMAGNC-----PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTMTR 681
            SN C  C R GH+ARECP                                IC+ CG  GH+A +C  +   C+NC   GH+A +C       E  C+ CGK GH ARDC        D + C +C + GH   DCT  +
Sbjct:    3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK 136

HSP 2 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNV--AICHNCGLPGHIASECTTKALCWNCREPGHMAGNCP--NEGICHTCGKAGHRARDCT 594
            C NC +PGH AR+C +     C++CG  GHI  +CT K  C+ C E GH+A NC   +E  C+ CG++GH AR+CT
Sbjct:   98 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172

HSP 3 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 1

Query:  373 NLCKNCKRPGHFARECP-NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMAGNCPN--EGICHTCGKAGHRARDCTAPPL----PPGDLRL---------CNNCYKQGHFAADCTMTRLA 687
            ++C  C   GH A++C      C+NCG  GHIA +C       +  C+NC +PGH+A +C +  E  C++CG+ GH  +DCT          G + +         C  C + GH A +CT+   A
Sbjct:   52 DICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 177

[Close]

BLAST of FC930153 vs. ExPASy Swiss-Prot
Match: CNBP_MOUSE (Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 46/140 (32.86%), Postives = 59/140 (42.14%), Query Frame = 1

Query:  370 SNLCKNCKRPGHFARECPNVA-----------------------------ICHNCGLPGHIASECTTK--ALCWNCREPGHMAGNC-----PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTMTR 681
            SN C  C R GH+ARECP                                IC+ CG  GH+A +C  +    C+NC   GH+A +C       E  C+ CGK GH ARDC        D + C +C + GH   DCT  +
Sbjct:    3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK 137

HSP 2 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  379 CKNCKRPGHFARECPNV--AICHNCGLPGHIASECTTKALCWNCREPGHMAGNCP--NEGICHTCGKAGHRARDCT 594
            C NC +PGH AR+C +     C++CG  GHI  +CT K  C+ C E GH+A NC   +E  C+ CG++GH AR+CT
Sbjct:   99 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 173

HSP 3 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 1

Query:  373 NLCKNCKRPGHFARECP--NVAICHNCGLPGHIASECTT-----KALCWNCREPGHMAGNCPN--EGICHTCGKAGHRARDCTAPPL----PPGDLRL---------CNNCYKQGHFAADCTMTRLA 687
            ++C  C   GH A++C       C+NCG  GHIA +C       +  C+NC +PGH+A +C +  E  C++CG+ GH  +DCT          G + +         C  C + GH A +CT+   A
Sbjct:   52 DICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA 178

The following BLAST results are available for this feature:

BLAST of FC930153 vs. ExPASy Swiss-Prot

BLAST of FC930153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10


Match Name	E-value	Identity	Description
CNBP_BOVIN	2.844e-16	34.85	Cellular nucleic acid-binding protein OS=Bos tauru...	[more]
GIS2_YEAST	3.208e-16	34.07	Zinc finger protein GIS2 OS=Saccharomyces cerevisi...	[more]
BYR3_SCHPO	4.190e-16	40.87	Cellular nucleic acid-binding protein homolog OS=S...	[more]
CNBP_CHICK	6.240e-16	34.33	Cellular nucleic acid-binding protein OS=Gallus ga...	[more]
HEXP_LEIMA	2.954e-15	32.39	DNA-binding protein HEXBP OS=Leishmania major GN=H...	[more]
GLH4_CAEEL	1.348e-14	42.86	ATP-dependent RNA helicase glh-4 OS=Caenorhabditis...	[more]
CNBP_RAT	1.348e-14	33.09	Cellular nucleic acid-binding protein OS=Rattus no...	[more]
CNBP_PONAB	1.348e-14	33.09	Cellular nucleic acid-binding protein OS=Pongo abe...	[more]
CNBP_HUMAN	1.348e-14	33.09	Cellular nucleic acid-binding protein OS=Homo sapi...	[more]
CNBP_MOUSE	1.761e-14	32.86	Cellular nucleic acid-binding protein OS=Mus muscu...	[more]

Properties


Property Name	Value
Genbank description	C34004D02EF PostHarvC1 Citrus clementina cDNA clone C34004D02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC930153 ID=FC930153; Name=FC930153; organism=Citrus clementina; type=EST; length=731bp
GGGAAACAATCTGTTAGCGGCTGCTCGTCATCTTTTCCTTCTCCAGGAGT
TGAAAATCGTAACAGTCGCAATTCCGTCCGTACATAAAAGTAATTTCTTT
AGCTAAAACAGTTCTCGTCGACAACAATTTTCGCTGACTCGCCGAGCAAG
ACTCATCAGGGAGGCAGCAGCTATTCTGGTGTTTGGTGGTGAAGTTTTTG
CAGATCGGTGGTGGTAGGTGTTAATAGGTGTTAGTTGAACATGAGTTCTG
TCAGCAGGAGCCGAAGCAGGAGCAGGAGCAGGAGCCCGCTGGATCGTAAG
ATCCGCTCTGATCGCTTCTCCTACCGTGATGCACCATACAGGAGAGGGTC
TCGTCGGGGTTACAGCCAAAGTAATCTTTGCAAGAATTGCAAACGGCCAG
GTCATTTTGCTAGAGAGTGCCCTAATGTGGCAATTTGTCACAATTGTGGT
CTTCCAGGCCACATTGCTTCAGAATGCACTACAAAGGCATTATGTTGGAA
TTGCCGGGAACCAGGGCACATGGCTGGCAACTGTCCAAATGAGGGCATCT
GCCACACCTGTGGCAAAGCTGGACATCGTGCAAGAGACTGCACTGCTCCC
CCACTGCCACCTGGGGACTTGAGATTGTGCAACAACTGCTATAAGCAGGG
TCATTTTGCAGCTGATTGTACAATGACAAGGCTTGCACAACTGTAGGAAG
ACAGGTCACCTGGCACGGGATTGTCCCATGA