FC930171

Overview
NameFC930171
Unique NameFC930171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 3.520e-94
Identity = 172/233 (73.82%), Postives = 195/233 (83.69%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVN---PVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIVSSLSN+ LDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP I          V+SVRYTRGSFIF GAQ FPHRSF+EEV VLD HFGK GM S A+VMG  +  ++WHVYSASAE+ + V    PVYTLEM MTGL ++ ASVF+K+  SSAA+MTEDSGIRKILP+S+ICDF+FDPCGYSMN+IEGDA+STIHVTPEDGFSYASFEAVGYDF+ + LT L+ERVL CF
Sbjct:   50 TIVSSLSNDLLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPHILELSGELSLTVQSVRYTRGSFIFPGAQTFPHRSFTEEVMVLDSHFGKLGMCSNAYVMGGAEKDQKWHVYSASAESANLVTQTAPVYTLEMSMTGLSKRNASVFFKSESSSAAVMTEDSGIRKILPESQICDFDFDPCGYSMNAIEGDAISTIHVTPEDGFSYASFEAVGYDFKSMGLTVLIERVLACF 282          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.024e-93
Identity = 167/230 (72.61%), Postives = 189/230 (82.17%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIV SLSN+YLDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIPAI          VR+V+YTRGSFIF GAQ FPHRSFSEEV +LD +FGK G++S AF+MG+PD  ++WHVYSAS  +    +P YTLEMCMTGLDR++ASVFYK+  SSAA+MT  SGIRKILP SEICDFEFDPCGYSMNSIE  A+STIHVTPEDGFSYASFEA GYD +   L  ++ERVL CF
Sbjct:   53 TIVDSLSNQYLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAILKLAESLSLSVRNVKYTRGSFIFPGAQSFPHRSFSEEVELLDNYFGKLGLESNAFIMGNPDQPQKWHVYSASVGSEQSSDPTYTLEMCMTGLDREKASVFYKSESSSAALMTTRSGIRKILPDSEICDFEFDPCGYSMNSIEEAAISTIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACF 282          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.282e-93
Identity = 169/230 (73.48%), Postives = 192/230 (83.48%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIV +LSN+Y+DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I          V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD T++WHVYSASA +    +PVYTLEMCMTGLDR++ASVFYKT ESSAA MT  SGIRKILPKSEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGF+YASFE+VGY+ + ++L PL+ERVL CF
Sbjct:   55 TIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACF 284          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 8.670e-93
Identity = 168/230 (73.04%), Postives = 189/230 (82.17%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIV +LSN+Y+DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I          V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MG+PD T++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD + ++L PL+ERVL CF
Sbjct:   55 TIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYSASAGPVQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDLKTMELGPLVERVLACF 284          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.132e-92
Identity = 161/230 (70.00%), Postives = 192/230 (83.48%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIVSSLSN+ LDSYVLSESSLF++PYK++IKTCGTTKLLLSI  +          V++VRYTRGSF+  G QPFPHR+FSEEV+VLDGHF K G+ S A++MG+ D TK+WHVYSAS+   ++ N VYTLEMCMTGLD+ +ASVFYK   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ +VLTCF
Sbjct:   51 TIVSSLSNDQLDSYVLSESSLFIFPYKIVIKTCGTTKLLLSIEPLLRLAGELSLDVKAVRYTRGSFLCPGGQPFPHRNFSEEVSVLDGHFAKLGLSSVAYLMGNDDETKKWHVYSASSANSNNKNNVYTLEMCMTGLDKDKASVFYKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCF 280          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 338.961 bits (868), Expect = 1.479e-92
Identity = 165/231 (71.43%), Postives = 192/231 (83.12%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHV-NPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIVSSLSN+ LDSYVLSESS FVYPYKVIIKTCGTTKLLLSIP +          V+SV+YTRGSF+  G QPFPHRSFSEEV+VLDGHF + G++S A++MG+ D TK+WHVY+ASA+  S+  N VYTLEMCMTGLDR++A+VFYK        MT++SGIRKILPKSEICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ RVL+CF
Sbjct:   51 TIVSSLSNDQLDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPGGQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYTLEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCF 281          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.295e-92
Identity = 168/230 (73.04%), Postives = 188/230 (81.74%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIV +LSN+Y+DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I          V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MG+PD T++WHVYSASA      +PVYTLEMCM GLDR++ASVFYKT ESSAA MT  SGIRKILPK EICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD +  +L PL+ERVL CF
Sbjct:   53 TIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYSASAGTVQCNDPVYTLEMCMAGLDREKASVFYKTEESSAAHMTVRSGIRKILPKFEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDPKTTELGPLVERVLACF 282          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.303e-92
Identity = 169/230 (73.48%), Postives = 187/230 (81.30%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIV SLSN+ +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I          V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD  ++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVL CF
Sbjct:   55 TIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACF 284          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.303e-92
Identity = 169/230 (73.48%), Postives = 187/230 (81.30%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIV SLSN+ +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP I          V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD  ++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVL CF
Sbjct:   55 TIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACF 284          
BLAST of FC930171 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.303e-92
Identity = 164/234 (70.09%), Postives = 193/234 (82.48%), Query Frame = 3
Query:    6 TIVSSLSNEYLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAIXXXXXXXXXXVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEA----GSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLTCF 695
            TIVSSLSN+ LDSYVLSESSLF++PYK+IIKTCGTTKLL SI  +          V+SVRYTRGSF+  G QPFPHR+FSEEV+VLDGHF K G+ S A++MG  D TK+WHVYSASA A    G++ N VYTLEMCMTGLD+++ASVFYK   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNS+EGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ +VLTCF
Sbjct:   51 TIVSSLSNDELDSYVLSESSLFIFPYKIIIKTCGTTKLLPSIEPLLRLAGELSLEVKSVRYTRGSFLCPGGQPFPHRNFSEEVSVLDGHFAKMGLSSVAYLMGDDDETKKWHVYSASAPARNGNGNNNNNVYTLEMCMTGLDKEKASVFYKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSVEGDAISTIHVTPEDGFSYASFEAVGYDFTTMDLSHLVSKVLTCF 284          
The following BLAST results are available for this feature:
BLAST of FC930171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_HELAN3.520e-9473.82S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM_CATRO1.024e-9372.61S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_SOLTU2.282e-9373.48S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_DATST8.670e-9373.04S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM2_ARATH1.132e-9270.00S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM1_ARATH1.479e-9271.43S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_SOLCI3.295e-9273.04S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_TOBAC4.303e-9273.48S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_NICSY4.303e-9273.48S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM2_BRAJU4.303e-9270.09S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34004E08EF PostHarvC1 Citrus clementina cDNA clone C34004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930171 ID=FC930171; Name=FC930171; organism=Citrus clementina; type=EST; length=695bp
GAATGACAATTGTTTCTTCGTTGTCAAATGAATATCTTGATTCATATGTC
CTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAGTTATTATCAAAAC
TTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCCATCCTCAAGTTAT
CTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATACACTCGCGGAAGC
TTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTAGCTTCTCTGAGGA
AGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGTATGGACAGCACAG
CTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATGGCATGTTTACTCT
GCTTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTTACACTCTAGAGAT
GTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTCTTCTACAAAACTA
ATGAAAGCTCAGCGGCTATGATGACCGAGGACTCTGGCATCAGAAAGATT
CTTCCAAAATCTGAGATTTGTGATTTTGAGTTTGACCCTTGTGGTTACTC
CATGAATAGTATTGAAGGGGATGCAGTATCTACTATCCACGTCACACCTG
AAGATGGTTTCAGTTATGCAAGTTTTGAGGCTGTGGGTTATGATTTTGAG
GTTGTGAAGTTGACTCCCTTGCTTGAGAGGGTGCTTACTTGCTTC
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