FC930208

Overview
NameFC930208
Unique NameFC930208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930208 vs. ExPASy Swiss-Prot
Match: Y3684_ARATH (Acyltransferase-like protein At3g26840, chloroplastic OS=Arabidopsis thaliana GN=At3g26840 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.985e-52
Identity = 93/132 (70.45%), Postives = 111/132 (84.09%), Query Frame = 3 
Query:    3 LKDYFDEAKDMIRSDGGPPRWFSPLECGAHSPDSPLLLYLPGIDGVGLGLIMQHQRVVQIFDVWCLHIPVKDRTSFTGLVKLVERTVRSENYRLPNRPIYLVGESLGACLALAVAAQNPDIDLVLILANPAT 398
            L D+ +EA++ +   GGPPRWFSPLECGA + +SPLLLYLPGIDG GLGLI  H+++ +IFD+WCLHIPV DRT    LVKL+E TV+SEN+RLPNRPIYLVGES+GACLAL VAA+NP+IDL LIL NPAT
Sbjct:   87 LSDFLEEAREFVGDGGGPPRWFSPLECGAQATNSPLLLYLPGIDGTGLGLIRHHKKLGEIFDIWCLHIPVSDRTPVKDLVKLIEETVKSENFRLPNRPIYLVGESIGACLALDVAARNPNIDLSLILVNPAT 218
[Close]
BLAST of FC930208 vs. ExPASy Swiss-Prot
Match: Y1457_ARATH (Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.666e-45
Identity = 86/166 (51.81%), Postives = 113/166 (68.07%), Query Frame = 3 
Query:    3 LKDYFDEAKDMIRSDGGPPRWFSPLECGAHSPDSPLLLYLPGIDGVGLGLIMQHQRVVQIFDVWCLHIPVKDRTSFTGLVKLVERTVRSENYRLPNRPIYLVGESLGACLALAVAAQNPDIDLVLILANPATSFSKSXXXXXXXXXXXXXDQFLLAFPYMLRLMQG 500
            +KDYF  AK+++++DGGPPRWFSP++CG    D+P LL+LPG+DG G+GL+  H+ + + F V CLHIPV DRT F GL+K+VE  +R E    PN+PIYLVG+S G CLALAVAA+N  +DLVLIL NPATSF +S             ++     PY L  + G
Sbjct:   92 VKDYFAAAKEILKADGGPPRWFSPVDCGRPVEDAPTLLFLPGMDGTGMGLVPHHKALGKAFHVSCLHIPVLDRTPFEGLLKVVEDVLRQEQATRPNKPIYLVGDSFGGCLALAVAARNRSLDLVLILVNPATSFDRSPLQPLLPILEMVPEELHFTVPYALSFIMG 257
The following BLAST results are available for this feature:
BLAST of FC930208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3684_ARATH6.985e-5270.45Acyltransferase-like protein At3g26840, chloroplas... [more]
Y1457_ARATH1.666e-4551.81Acyltransferase-like protein At1g54570, chloroplas... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34004H09EF PostHarvC1 Citrus clementina cDNA clone C34004H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930208 ID=FC930208; Name=FC930208; organism=Citrus clementina; type=EST; length=674bp
GTTTGAAAGATTACTTTGACGAAGCCAAAGATATGATCAGATCAGACGGT
GGTCCGCCTCGCTGGTTCTCTCCGTTGGAGTGCGGGGCCCACTCTCCCGA
TTCTCCTCTCCTTCTATATCTACCTGGGATTGATGGAGTTGGACTTGGAC
TTATAATGCAGCATCAAAGAGTTGTACAGATTTTTGATGTATGGTGCTTG
CATATTCCAGTCAAGGATCGAACATCATTTACAGGGCTAGTGAAGCTGGT
TGAAAGAACAGTCAGATCAGAGAATTATCGTTTGCCTAATAGACCCATAT
ATCTTGTTGGAGAGTCTCTTGGAGCATGCCTTGCACTAGCCGTTGCAGCT
CAGAATCCTGATATTGACCTTGTACTGATTTTGGCTAACCCAGCTACATC
TTTCAGCAAGTCACAGTTGCAACCTCTGATACCTTTATTGCAACTCACGC
CTGATCAATTCCTTCTCGCCTTTCCATATATGCTGAGATTAATGCAAGGT
TGTAGTTGATAATAGTCAGATGAAGAATTCAGGTATCTGTATGTGTTGTT
TGTTAAATTTCAAGACAATGGCAAAGCAAGAATTGGTATTTGGTGCTTAA
CCATACAACCGAGAAATTAAAAAGGTGATCCTTTGAGGATGGCAGTGGAT
ATTCTGGTNGAGGTACTTCCTTTG
back to top