FC930238

Overview
NameFC930238
Unique NameFC930238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930238 vs. ExPASy Swiss-Prot
Match: SKI27_ARATH (F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.438e-24
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = 2
Query:  296 VRYTRGLGRKRILIANG----------EETXXXXXXXXXXXLKRQCSE-KMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHFAYNTPRKTRVFKTSIDYED 631
            VR+TRGLGRKRILI++           E             LKRQ S   ++  +  EKSRLE LPQD+LIR++CGV+HEDLK L  VS+ IREA+L+AK  HFAY TP+KTR F+ SID E+
Sbjct:   63 VRFTRGLGRKRILISSCVRESLSRSAVEIPVVSESPPVKSSLKRQRSRITIVSSSSSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTRAFRNSIDLEE 185          
BLAST of FC930238 vs. ExPASy Swiss-Prot
Match: FB220_ARATH (F-box protein At4g05010 OS=Arabidopsis thaliana GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.907e-15
Identity = 51/109 (46.79%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  293 FVRYTRGLGRKRILIANGEETXXXXXXXXXXXLKRQCSEKMIDFNCDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHFAYNTPRKTRVFKTSI 619
            FVR+TRGLGRKRILI+                +KR   E     +C  +S LE L QDILIR+LC V+HEDL  L  VS+ IR+A + AK+ HF Y+TP+K   F+ +I
Sbjct:   23 FVRFTRGLGRKRILISK------RAPENDSPPVKRPSHETTE--SC--RSLLETLHQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAI 121          
BLAST of FC930238 vs. ExPASy Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 29/58 (50.00%), Postives = 47/58 (81.03%), Query Frame = 2
Query:  428 CDEKSRLEALPQDILIRILCGVNHEDLKQLFHVSRPIREATLIAKQWHFAYNTPRKTR 601
            C  +S+LE+LP D+L++I+C ++H+ LK +FHVS+ IR AT++A+Q+HF Y TP ++R
Sbjct:  156 CVSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFNYTTPDRSR 213          
The following BLAST results are available for this feature:
BLAST of FC930238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SKI27_ARATH1.438e-2452.03F-box protein SKIP27 OS=Arabidopsis thaliana GN=SK... [more]
FB220_ARATH7.907e-1546.79F-box protein At4g05010 OS=Arabidopsis thaliana GN... [more]
FB248_ARATH3.673e-1250.00F-box protein At4g35930 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC34005C06EF PostHarvC1 Citrus clementina cDNA clone C34005C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930238 ID=FC930238; Name=FC930238; organism=Citrus clementina; type=EST; length=633bp
TTGAAAGTCGGTTCTTGTTTCCATTTAGGCCATAAACAGAAACAGCAGCA
GTAACAGTTACCTCAAATTTAGGATTCACAATCCAATTCAAAAGTTTTGT
CATATCTCATCTTACCATATATCTGTTTTTCAAAACTGTGTCTTTGATCC
CTTGAAACAATCAATATTTTTTTTCACTTTCCGGGGAAGCAGAGTGTTAA
CAACTAAAAGAAGTATGGCACTGGGGCAAAACTGCAGTTCATTGAAATCA
AGGCGAGGTGTTGCCGGTACTGGAGAGGGATTAGGGTTGGGGTTTGTGAG
GTACACTCGAGGGTTGGGGAGGAAGAGGATTTTGATTGCGAATGGTGAGG
AAACGTCGTCGTTTGATTCAGCAACCAAGTCTTCGTCGTTGAAGAGGCAA
TGCAGTGAGAAAATGATTGATTTTAACTGTGATGAAAAGTCACGACTTGA
AGCCTTGCCTCAAGATATCCTTATTAGGATTCTTTGCGGTGTTAATCACG
AAGATTTGAAGCAGCTTTTTCATGTATCTAGGCCAATCAGAGAAGCTACT
CTGATTGCAAAGCAATGGCACTTCGCGTACAATACACCAAGAAAGACTCG
GGTGTTTAAAACATCGATTGATTATGAGGATCC
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