FC930246

Overview
NameFC930246
Unique NameFC930246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930246_ssr37 microsatellite FC930246_ssr37:37..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11412 contig Ccv1_Contig11412:33..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930246 vs. ExPASy Swiss-Prot
Match: Y2734_ARATH (Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.817e-60
Identity = 112/142 (78.87%), Postives = 125/142 (88.03%), Query Frame = 1 
Query:  244 MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEEKCKAISLFGDVVRLN 669
            MES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRAESD TVPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKDEE  KAISLF  VV L+
Sbjct:    1 MESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLS 142
The following BLAST results are available for this feature:
BLAST of FC930246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2734_ARATH1.817e-6078.87Uncharacterized protein At2g17340 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34005D02EF PostHarvC1 Citrus clementina cDNA clone C34005D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930246 ID=FC930246; Name=FC930246; organism=Citrus clementina; type=EST; length=669bp
GAAGAACAGAGAAGCGTATTCCAATTTCCAAAAGAAAGAGAGAGAGAGAG
AGAGAGAGAGAGAGGATTTGGGCGGTCGCAGACGCAGAGCTCGGCCCCCA
AGACAACGGAATCCATTCTCAGCAGACCAACTTGAGAGGATAGCTGTTGT
CTTGCCATTCTCTCCCTTTTTTTCTATACATATAATAAGTCAGCTGCTTC
GCATTTTGTTTCTTCATTCTTCATTTCATTCATTCCGCAAGAAATGGAGA
GTGAATCGGAGCTTGTTCCATTCCCACTGCTTCCGACTCCGATCGAAACA
AACTACAGGGCATGCACAATTCCGTACAGATTCCCAACTGACAATCCCAA
AAAGCCTACTCGTACTGAGATTGCTTGGCTCGACCTCTTCCTCAATTCTA
TTCCTTCTTTCAAGAAGCGAGCTGAGAGTGATCCCACTGTGCCTGATGCT
CACGTCAGAGCTGAGAAATTTGCTCAAAGGTATTCAGAGATACTTGAGGA
CATGAAGAAAGATCCAGAAACTCATGGTGGACCACCTGATTGCATTCTTC
TTTGCCGACTTCGTGAGCAAGTCCTTAGAGAATTGGGCTTCAGAGATATA
TTCAAGAAAGTCAAGGATGAAGAGAAATGCAAGGCTATATCCTTATTTGG
GGATGTGGTTCGTCTTAAC
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