FC930262

Overview
NameFC930262
Unique NameFC930262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15372 contig Ccv1_Contig15372:9..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930262 vs. ExPASy Swiss-Prot
Match: CX056_DANRE (UPF0428 protein CXorf56 homolog OS=Danio rerio GN=zgc:103697 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   50 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL 403
            MPK  + +    D       D  +  L VYYC  CG  VL+ D Q++K+P R  DKA V+D  KH  +  N++E   V L+R EG +E+Q+R  C  CGL + Y+ +  ++     ++VDGAL
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQIEKLPMRPRDKARVIDAAKHAHKFCNVEEDEAVYLKRSEG-IERQYRKKCGKCGLLLFYQHQ--MKSTQTTFIVDGAL 119          
BLAST of FC930262 vs. ExPASy Swiss-Prot
Match: CX056_XENTR (UPF0428 protein CXorf56 homolog OS=Xenopus tropicalis GN=TNeu084h20.1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = 2
Query:   50 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL 403
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  DKA V+D  KH  +  N +E   V LRR +G +E+Q+R  C  C L + Y+  +    A+FI  V+GAL
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDKARVIDAAKHAHKFCNTEEEEPVYLRRPDG-IERQYRKKCSKCSLLLFYQHSQKNVAATFI--VNGAL 119          
BLAST of FC930262 vs. ExPASy Swiss-Prot
Match: CX056_BOVIN (UPF0428 protein CXorf56 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   50 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL 403
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++   + LRR EG +E+Q+R  C  CGL + Y+S+   + A   ++VDGA+
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDGAKHAHKFCNTEDEETIYLRRPEG-IERQYRKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
BLAST of FC930262 vs. ExPASy Swiss-Prot
Match: CX056_HUMAN (UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   50 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL 403
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++   + LRR EG +E+Q+R  C  CGL + Y+S+   + A   ++VDGA+
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEG-IERQYRKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
BLAST of FC930262 vs. ExPASy Swiss-Prot
Match: CX056_MOUSE (UPF0428 protein CXorf56 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 2
Query:   50 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL 403
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++     LRR EG +E+Q+R  C  CGL + Y+S+   + A   ++VDGA+
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETTYLRRPEG-IERQYRKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
BLAST of FC930262 vs. ExPASy Swiss-Prot
Match: CX056_XENLA (UPF0428 protein CXorf56 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = 2
Query:   50 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL 403
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D+A V+   KH  +  N +E   V LRR +G +E+Q+R  C  C L + Y+  +    A+FI  V+GAL
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRARVIGAAKHAHKFCNTEEEEPVYLRRSDG-IERQYRKKCSKCSLLLFYQHSQKNAAATFI--VNGAL 119          
BLAST of FC930262 vs. ExPASy Swiss-Prot
Match: CX056_PONAB (UPF0428 protein CXorf56 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 2
Query:   50 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFIYVVDGAL 403
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++   + LRR EG +E+Q+   C  CGL + Y+S+   + A   ++VDGA+
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEG-IERQYGKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
The following BLAST results are available for this feature:
BLAST of FC930262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CX056_DANRE1.404e-1337.40UPF0428 protein CXorf56 homolog OS=Danio rerio GN=... [more]
CX056_XENTR9.099e-1339.02UPF0428 protein CXorf56 homolog OS=Xenopus tropica... [more]
CX056_BOVIN2.027e-1236.59UPF0428 protein CXorf56 homolog OS=Bos taurus PE=2... [more]
CX056_HUMAN2.648e-1236.59UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56... [more]
CX056_MOUSE3.458e-1236.59UPF0428 protein CXorf56 homolog OS=Mus musculus PE... [more]
CX056_XENLA5.898e-1237.40UPF0428 protein CXorf56 homolog OS=Xenopus laevis ... [more]
CX056_PONAB1.716e-1135.77UPF0428 protein CXorf56 homolog OS=Pongo abelii PE... [more]
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Properties
Property NameValue
Genbank descriptionC34005E06EF PostHarvC1 Citrus clementina cDNA clone C34005E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930262 ID=FC930262; Name=FC930262; organism=Citrus clementina; type=EST; length=704bp
GAGGCAGAGCTGAAGCTAAAGCTCGGAGACGCAAAGAGAGAAAACAGGAA
TGCCGAAGAGAACAACGCACACATACTCGAGCGAGGACGCAGCTCCCGAT
GGCCCTGATTCTGATCTCTTCGTCTACTATTGCAAACACTGTGGATCCCA
CGTCCTCATCACTGATACGCAATTGCAGAAAATGCCCAAAAGGAAGACTG
ACAAAGCCTATGTGTTGGACAAGACCAAGCATCTTGCTAGACTGAACATC
AAGGAAGCTGGCAAAGTTCTCCTAAGACGGGGTGAAGGCAAATTGGAGAA
GCAATTTCGGATGAACTGTATAGGTTGTGGGCTATTTGTTTGCTATAGGT
CAGAGGAAACTTTGGAAGTGGCTTCTTTCATCTATGTTGTCGACGGTGCT
CTTAGTACGGTTGCTGCTGAAACCAACCCACAGGATGCTCCTGTACCGCC
CTGCATTTCGCAGTTGGAAGGAGGGCTGGTTCAAGTGGCCATAGAGGTGG
AGGACCGTGCGCAACGCTCAGCAATTACAAGAGTGAATGCTGATGACGTT
CGAGTTACTGTGGCGGCACCTGCAGCCCGTGGGGAAGCGAACAATGAACT
TTTGGAGTTCATGGGAAAGGTATTGAGTCTGAGATTGAGCCAGATGACTC
TTCAAAGAGGGTGGAATAACAATCAAAGCTCCTGGTGGTGGAGATCTGTC
AGCA
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