FC930274

Overview
NameFC930274
Unique NameFC930274
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930274_ssr420 microsatellite FC930274_ssr420:420..431. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14287 contig Ccv1_Contig14287:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 58/212 (27.36%), Postives = 92/212 (43.40%), Query Frame = 1
Query:   64 VNFFLSICLLKSAPMAKALSVLNLPAHVAPRRNHSRPSLSYRPMMVTMAMSTPNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAV 699
            ++FFLS  + K       LS+    + +  +      S S     V  + S+    K+Y       +   L  A            MR+ + A    + P LC+AACEL GG                  S +H++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A++    G +S RI+RV+ E+ + +GS+G+V G V
Sbjct:   15 ISFFLSGTIRKPIFSCSRLSI----SAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQV 219          
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 51/156 (32.69%), Postives = 73/156 (46.79%), Query Frame = 1
Query:  232 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAV 699
            KSY       I   L  A            MR+ + A    + PALC+AACELVGG+                 S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A S      +S RI+R + E+ +A+G++G+V G V
Sbjct:   80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQV 232          
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 55/204 (26.96%), Postives = 90/204 (44.12%), Query Frame = 1
Query:  145 VAPRRNHSRPSLSYRPMMVTMAMST-------------PNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAVQ*ATCS 717
            + P+ N  RP   + P+ V+   +T             P   K Y T     +   L +A            MR+ + A    + P LC+AACELVGG++E               S IH++LP  D   L  + KPT +  +  +  +L  D++L F  E + +S   AG    RI+  + E+ +++G++G+V G V    C+
Sbjct:   40 INPKLNKKRP---FSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS--TAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCT 237          
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 1
Query:  322 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAV 699
            MR+ + A    + P LC+AACELVGG                  S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E LAS+ +    +  R++R + E+ +A+G++G+V G V
Sbjct:  107 MRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQV 231          
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 42/126 (33.33%), Postives = 67/126 (53.17%), Query Frame = 1
Query:  322 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAV 699
            MR+ + A    + P LC+AACELVGG                  S IH++LP  D   L  + KPT +  +  +  +L  DA+L F  E LAS+ + +  +  R++R + E+ +A+G++G+V G V
Sbjct:  103 MRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQV 226          
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 50/186 (26.88%), Postives = 79/186 (42.47%), Query Frame = 1
Query:  151 PRRNHSRPSLSYRPMMVTMAMSTPNKN----KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAP-ALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEG 693
            P + H+ P       + + + S P       ++YWT++  +I   L +A            MR+ V A     AP  +CVAACEL GG R                S IH++LP  D    + + KP+ +  +     +L  DA+ P   + + S   P       ILR++ E+ R +GS G+  G
Sbjct:   17 PEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDP-VRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAG 201          
The following BLAST results are available for this feature:
BLAST of FC930274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GGPPS_CATRO3.952e-1427.36Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR8.805e-1432.69Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN1.150e-1326.96Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.150e-1334.13Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL9.735e-1333.33Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGR_ARATH4.832e-1226.88Geranylgeranyl pyrophosphate synthase-related prot... [more]
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Properties
Property NameValue
Genbank descriptionC34005F10EF PostHarvC1 Citrus clementina cDNA clone C34005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930274 ID=FC930274; Name=FC930274; organism=Citrus clementina; type=EST; length=732bp
GAAAACTCATAATTTTTCTCCACCCAATCCTTTCTCTCCTTCACTCACCT
TTCTTCGTATATAGTTAATTTCTTCCTTTCTATTTGTCTTTTGAAGTCTG
CACCAATGGCTAAAGCCCTCTCTGTTTTAAACCTACCGGCTCATGTTGCC
CCTAGGCGAAATCACAGCCGTCCATCATTGTCCTACAGACCTATGATGGT
CACCATGGCCATGTCCACACCCAACAAGAATAAATCATATTGGACGTCTG
TACATGAGGATATTGGGGCCCACCTCCGGCAGGCCGTCGTCGTAAAGGAG
CCGGTAGAAGTTTACGAGCCCATGCGCCATTTTGTCTTCGCCGCCCCAGT
CAACATGGCGCCCGCGCTGTGTGTGGCAGCCTGTGAGCTCGTCGGGGGCC
ACCGCGAACAAGCCATTGTTGCTGCTGCTGCTTTGCACGTCATGCATGCA
GCTTCTTTCATTCATGAAAATCTTCCACTATCAGATAGGACTAGTCTTAT
CCCCAAATCCAAGCCCACGATGTATCACGCTTTCAAACCAAATACGGAGC
TTCTCGTGGCTGATGCAATGCTTCCGTTTGGGCTGGAGTTGTTGGCCAGC
TCCGACAACCCGGCCGGAAACAACTCGGGTCGGATTTTACGTGTGATGGT
TGAGATGACACGCGCCATGGGATCACAAGGTGTTGTGGAGGGGGCAGTAC
AATGAGCTACATGTAGTCAATGTGATGATGAT
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