FC930274
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14 Identity = 58/212 (27.36%), Postives = 92/212 (43.40%), Query Frame = 1 Query: 64 VNFFLSICLLKSAPMAKALSVLNLPAHVAPRRNHSRPSLSYRPMMVTMAMSTPNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAV 699 ++FFLS + K LS+ + + + S S V + S+ K+Y + L A MR+ + A + P LC+AACEL GG S +H++LP D L + KPT + F + +L DA+L F E +A++ G +S RI+RV+ E+ + +GS+G+V G V Sbjct: 15 ISFFLSGTIRKPIFSCSRLSI----SAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQV 219
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14 Identity = 51/156 (32.69%), Postives = 73/156 (46.79%), Query Frame = 1 Query: 232 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAV 699 KSY I L A MR+ + A + PALC+AACELVGG+ S IH++LP D L + KPT + F + +L DA+L F E +A S +S RI+R + E+ +A+G++G+V G V Sbjct: 80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQV 232
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13 Identity = 55/204 (26.96%), Postives = 90/204 (44.12%), Query Frame = 1 Query: 145 VAPRRNHSRPSLSYRPMMVTMAMST-------------PNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAVQ*ATCS 717 + P+ N RP + P+ V+ +T P K Y T + L +A MR+ + A + P LC+AACELVGG++E S IH++LP D L + KPT + + + +L D++L F E + +S AG RI+ + E+ +++G++G+V G V C+ Sbjct: 40 INPKLNKKRP---FSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS--TAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCT 237
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13 Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 1 Query: 322 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAV 699 MR+ + A + P LC+AACELVGG S IH++LP D L + KPT + F + +L DA+L F E LAS+ + + R++R + E+ +A+G++G+V G V Sbjct: 107 MRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQV 231
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13 Identity = 42/126 (33.33%), Postives = 67/126 (53.17%), Query Frame = 1 Query: 322 MRHFVFAAPVNMAPALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGAV 699 MR+ + A + P LC+AACELVGG S IH++LP D L + KPT + + + +L DA+L F E LAS+ + + + R++R + E+ +A+G++G+V G V Sbjct: 103 MRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQV 226
BLAST of FC930274 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12 Identity = 50/186 (26.88%), Postives = 79/186 (42.47%), Query Frame = 1 Query: 151 PRRNHSRPSLSYRPMMVTMAMSTPNKN----KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAP-ALCVAACELVGGHREQXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEG 693 P + H+ P + + + S P ++YWT++ +I L +A MR+ V A AP +CVAACEL GG R S IH++LP D + + KP+ + + +L DA+ P + + S P ILR++ E+ R +GS G+ G Sbjct: 17 PEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDP-VRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAG 201 The following BLAST results are available for this feature:
BLAST of FC930274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930274 ID=FC930274; Name=FC930274; organism=Citrus clementina; type=EST; length=732bpback to top |